Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
USP29Q9HBJ7 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 PTCHD3P3-201ENST00000403073 906 ntBASIC17.35■□□□□ 0.37
USP29Q9HBJ7 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 AC006538.1-201ENST00000567905 1585 ntBASIC17.35■□□□□ 0.37
USP29Q9HBJ7 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
USP29Q9HBJ7 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 TOP3BP1-201ENST00000420768 1380 ntBASIC17.34■□□□□ 0.37
USP29Q9HBJ7 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 ALOX12P2-203ENST00000570921 1945 ntBASIC17.34■□□□□ 0.37
USP29Q9HBJ7 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.34■□□□□ 0.37
USP29Q9HBJ7 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AL513477.1-201ENST00000602865 2407 ntBASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AC104109.2-201ENST00000602919 1418 ntBASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AL662844.4-201ENST00000606367 2838 ntBASIC17.34■□□□□ 0.37
USP29Q9HBJ7 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USP29Q9HBJ7 AL596257.1-201ENST00000641463 2694 ntBASIC17.34■□□□□ 0.37
USP29Q9HBJ7 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 SNX33P1-201ENST00000592116 1762 ntBASIC17.33■□□□□ 0.37
USP29Q9HBJ7 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 AC006504.4-201ENST00000592118 1568 ntBASIC17.33■□□□□ 0.37
USP29Q9HBJ7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USP29Q9HBJ7 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 MIR940-201ENST00000401276 94 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 MED15P5-201ENST00000423150 992 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 LAGE3P1-201ENST00000425356 484 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 HLA-J-202ENST00000469281 1241 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.33■□□□□ 0.36
USP29Q9HBJ7 AC105339.3-201ENST00000560043 636 ntBASIC17.33■□□□□ 0.36
USP29Q9HBJ7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms