Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 AC090616.6-201ENST00000582640 721 ntBASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CCDC28BQ9BUN5 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 AP002414.1-201ENST00000391405 1147 ntBASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 AC246785.2-201ENST00000432512 513 ntBASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 AC011467.2-201ENST00000598425 242 ntBASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 AC013467.2-201ENST00000605472 835 ntBASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CCDC28BQ9BUN5 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 TERF1P1-201ENST00000311003 1181 ntBASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 TSPY22P-201ENST00000427496 604 ntBASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CCDC28BQ9BUN5 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CCDC28BQ9BUN5 KRT8P49-201ENST00000604166 1432 ntBASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms