Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 IGF1-203ENST00000392904 761 ntTSL 5 BASIC14.5□□□□□ -0.09
COL12A1Q99715 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.5□□□□□ -0.09
COL12A1Q99715 PFN1P12-201ENST00000455938 534 ntBASIC14.5□□□□□ -0.09
COL12A1Q99715 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
COL12A1Q99715 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.5□□□□□ -0.09
COL12A1Q99715 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
COL12A1Q99715 FLJ13224-201ENST00000313737 1514 ntBASIC14.5□□□□□ -0.09
COL12A1Q99715 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC14.5□□□□□ -0.09
COL12A1Q99715 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
COL12A1Q99715 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 AC091167.2-201ENST00000579581 588 ntBASIC14.5□□□□□ -0.09
COL12A1Q99715 AC091271.1-201ENST00000611877 1162 ntBASIC14.5□□□□□ -0.09
COL12A1Q99715 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.5□□□□□ -0.09
COL12A1Q99715 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
COL12A1Q99715 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.5□□□□□ -0.09
COL12A1Q99715 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.5□□□□□ -0.09
COL12A1Q99715 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.5□□□□□ -0.09
COL12A1Q99715 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC14.5□□□□□ -0.09
COL12A1Q99715 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.5□□□□□ -0.09
COL12A1Q99715 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL12A1Q99715 AC123567.1-201ENST00000548294 1261 ntBASIC14.5□□□□□ -0.09
COL12A1Q99715 CHMP4BP1-201ENST00000556017 588 ntBASIC14.5□□□□□ -0.09
COL12A1Q99715 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.5□□□□□ -0.09
COL12A1Q99715 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.49□□□□□ -0.09
COL12A1Q99715 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
COL12A1Q99715 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL12A1Q99715 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC14.49□□□□□ -0.09
COL12A1Q99715 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
COL12A1Q99715 LBX2-201ENST00000341396 886 ntTSL 3 BASIC14.49□□□□□ -0.09
COL12A1Q99715 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.49□□□□□ -0.09
COL12A1Q99715 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.49□□□□□ -0.09
COL12A1Q99715 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.49□□□□□ -0.09
COL12A1Q99715 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.49□□□□□ -0.09
COL12A1Q99715 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC14.49□□□□□ -0.09
COL12A1Q99715 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC14.49□□□□□ -0.09
COL12A1Q99715 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL12A1Q99715 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC14.49□□□□□ -0.09
COL12A1Q99715 AC138627.1-207ENST00000641560 1006 ntBASIC14.49□□□□□ -0.09
COL12A1Q99715 MSTO2P-201ENST00000314835 1709 ntBASIC14.49□□□□□ -0.09
COL12A1Q99715 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL12A1Q99715 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC14.49□□□□□ -0.09
COL12A1Q99715 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC14.49□□□□□ -0.09
COL12A1Q99715 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC14.48□□□□□ -0.09
COL12A1Q99715 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC14.48□□□□□ -0.09
COL12A1Q99715 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.48□□□□□ -0.09
COL12A1Q99715 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.48□□□□□ -0.09
COL12A1Q99715 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.48□□□□□ -0.09
COL12A1Q99715 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL12A1Q99715 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 POR-209ENST00000439269 1858 ntTSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
COL12A1Q99715 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
COL12A1Q99715 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
COL12A1Q99715 AL671710.1-201ENST00000610245 2349 ntBASIC14.48□□□□□ -0.09
COL12A1Q99715 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL12A1Q99715 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC14.48□□□□□ -0.09
COL12A1Q99715 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC14.48□□□□□ -0.09
COL12A1Q99715 AP000812.2-201ENST00000538934 718 ntBASIC14.48□□□□□ -0.09
COL12A1Q99715 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC14.48□□□□□ -0.09
COL12A1Q99715 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.48□□□□□ -0.09
COL12A1Q99715 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.48□□□□□ -0.09
COL12A1Q99715 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC14.48□□□□□ -0.09
COL12A1Q99715 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms