Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NUP88Q99567 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC19.68■□□□□ 0.74
NUP88Q99567 FRMD8P1-201ENST00000440433 1524 ntBASIC19.68■□□□□ 0.74
NUP88Q99567 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NUP88Q99567 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NUP88Q99567 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NUP88Q99567 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC19.68■□□□□ 0.74
NUP88Q99567 TSEN15P1-201ENST00000423257 515 ntBASIC19.68■□□□□ 0.74
NUP88Q99567 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.68■□□□□ 0.74
NUP88Q99567 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.68■□□□□ 0.74
NUP88Q99567 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.68■□□□□ 0.74
NUP88Q99567 AC093520.2-201ENST00000561830 333 ntBASIC19.68■□□□□ 0.74
NUP88Q99567 AC005412.3-201ENST00000580309 715 ntBASIC19.68■□□□□ 0.74
NUP88Q99567 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.68■□□□□ 0.74
NUP88Q99567 AC004835.2-201ENST00000603762 682 ntBASIC19.68■□□□□ 0.74
NUP88Q99567 AC106028.4-201ENST00000614509 607 ntBASIC19.68■□□□□ 0.74
NUP88Q99567 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.68■□□□□ 0.74
NUP88Q99567 AL023806.1-201ENST00000603994 1649 ntBASIC19.68■□□□□ 0.74
NUP88Q99567 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NUP88Q99567 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NUP88Q99567 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC19.68■□□□□ 0.74
NUP88Q99567 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
NUP88Q99567 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC19.68■□□□□ 0.74
NUP88Q99567 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NUP88Q99567 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
NUP88Q99567 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
NUP88Q99567 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.67■□□□□ 0.74
NUP88Q99567 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.67■□□□□ 0.74
NUP88Q99567 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 AC012569.1-201ENST00000591191 1524 ntBASIC19.67■□□□□ 0.74
NUP88Q99567 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
NUP88Q99567 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC19.67■□□□□ 0.74
NUP88Q99567 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.67■□□□□ 0.74
NUP88Q99567 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC19.67■□□□□ 0.74
NUP88Q99567 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.67■□□□□ 0.74
NUP88Q99567 AL671277.1-201ENST00000429656 993 ntBASIC19.67■□□□□ 0.74
NUP88Q99567 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
NUP88Q99567 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
NUP88Q99567 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.67■□□□□ 0.74
NUP88Q99567 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
NUP88Q99567 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC19.67■□□□□ 0.74
NUP88Q99567 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.67■□□□□ 0.74
NUP88Q99567 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
NUP88Q99567 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC19.67■□□□□ 0.74
NUP88Q99567 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.67■□□□□ 0.74
NUP88Q99567 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NUP88Q99567 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.66■□□□□ 0.74
NUP88Q99567 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NUP88Q99567 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
NUP88Q99567 CYMP-203ENST00000474680 1263 ntBASIC19.66■□□□□ 0.74
NUP88Q99567 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.66■□□□□ 0.74
NUP88Q99567 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
NUP88Q99567 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
NUP88Q99567 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NUP88Q99567 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.65■□□□□ 0.74
NUP88Q99567 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.65■□□□□ 0.74
NUP88Q99567 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.65■□□□□ 0.74
NUP88Q99567 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.65■□□□□ 0.74
NUP88Q99567 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.65■□□□□ 0.74
NUP88Q99567 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.65■□□□□ 0.74
NUP88Q99567 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC19.65■□□□□ 0.74
NUP88Q99567 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC19.65■□□□□ 0.74
NUP88Q99567 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NUP88Q99567 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC19.65■□□□□ 0.74
NUP88Q99567 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms