Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
CCDC140Q96MF4 AL118508.1-201ENST00000613502 2345 ntBASIC13.02□□□□□ -0.32
CCDC140Q96MF4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
CCDC140Q96MF4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 IGLL3P-201ENST00000412472 434 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 VN2R19P-201ENST00000442399 1052 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 FAM185BP-201ENST00000443595 716 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 CXCL1P1-201ENST00000502804 216 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 MMP17-203ENST00000535004 719 ntTSL 3 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 AC087641.1-201ENST00000557561 1021 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 SIGLEC29P-201ENST00000599873 1114 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 AL671710.1-201ENST00000610245 2349 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 AC104109.2-201ENST00000602919 1418 ntBASIC13.02□□□□□ -0.33
CCDC140Q96MF4 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
CCDC140Q96MF4 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 CRYGEP-201ENST00000412192 528 ntBASIC13.01□□□□□ -0.33
CCDC140Q96MF4 HCG4-201ENST00000418983 998 ntBASIC13.01□□□□□ -0.33
CCDC140Q96MF4 AC026396.1-201ENST00000419388 421 ntBASIC13.01□□□□□ -0.33
CCDC140Q96MF4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 AC145285.3-201ENST00000564603 959 ntBASIC13.01□□□□□ -0.33
CCDC140Q96MF4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 IL9RP2-201ENST00000423948 1312 ntBASIC13.01□□□□□ -0.33
CCDC140Q96MF4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CCDC140Q96MF4 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 AC124067.4-201ENST00000519691 2379 ntBASIC13□□□□□ -0.33
CCDC140Q96MF4 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC13□□□□□ -0.33
CCDC140Q96MF4 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13□□□□□ -0.33
CCDC140Q96MF4 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms