Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 AC132872.4-202ENST00000622924 2756 ntBASIC18.22■□□□□ 0.51
CCDC42Q96M95 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.22■□□□□ 0.51
CCDC42Q96M95 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
CCDC42Q96M95 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 LINC00982-205ENST00000420957 435 ntBASIC18.21■□□□□ 0.51
CCDC42Q96M95 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 TPSP2-201ENST00000561760 610 ntBASIC18.21■□□□□ 0.51
CCDC42Q96M95 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 KRT8P49-201ENST00000604166 1432 ntBASIC18.21■□□□□ 0.51
CCDC42Q96M95 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
CCDC42Q96M95 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC42Q96M95 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC42Q96M95 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
CCDC42Q96M95 AC005052.1-201ENST00000625181 2492 ntBASIC18.21■□□□□ 0.5
CCDC42Q96M95 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
CCDC42Q96M95 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TOB2P1-201ENST00000469761 992 ntBASIC18.2■□□□□ 0.5
CCDC42Q96M95 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 AC114341.1-201ENST00000618070 349 ntBASIC18.2■□□□□ 0.5
CCDC42Q96M95 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 SIGLEC16-201ENST00000599858 1437 ntBASIC18.2■□□□□ 0.5
CCDC42Q96M95 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC42Q96M95 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC42Q96M95 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC42Q96M95 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms