Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SYNE1Q8NF91 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 FUT8-AS1-201ENST00000621019 1521 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AL139384.1-201ENST00000612143 3047 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PRSS29P-201ENST00000440800 595 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 SLBP-205ENST00000488267 987 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PRR29-209ENST00000582540 967 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AC008687.5-201ENST00000593746 558 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AC009949.1-201ENST00000623048 1830 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 LINC00554-201ENST00000564841 3011 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AC254562.1-201ENST00000417586 456 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ORC5-208ENST00000626700 344 ntTSL 3 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AP002414.1-201ENST00000391405 1147 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 HMGA1P7-201ENST00000406908 502 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 MRPS18AP1-201ENST00000414458 589 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PAWRP1-201ENST00000451083 565 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AC011676.5-201ENST00000624864 2660 ntBASIC5.23□□□□□ -1.57
SYNE1Q8NF91 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 KLK8-202ENST00000320838 456 ntTSL 5 BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
SYNE1Q8NF91 PNMT-202ENST00000394246 821 ntTSL 2 BASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms