Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 HLA-J-202ENST00000469281 1241 ntBASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 AC108751.1-201ENST00000490852 363 ntBASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 MIR4492-201ENST00000581627 80 ntBASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 BSG-214ENST00000614867 960 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 AC131009.4-201ENST00000624048 1740 ntBASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 HLA-A-201ENST00000376802 1334 ntBASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.7■□□□□ 0.58
CCDC65Q8IXS2 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 METTL26-205ENST00000397666 726 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 AC005412.3-201ENST00000580309 715 ntBASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 AC010654.1-201ENST00000615722 808 ntBASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC18.69■□□□□ 0.58
CCDC65Q8IXS2 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AC006538.1-201ENST00000567905 1585 ntBASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 PMS2P1-201ENST00000431037 1228 ntBASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 PRSS29P-201ENST00000440800 595 ntBASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 OR7E47P-204ENST00000575924 449 ntBASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 MIR4751-201ENST00000578027 74 ntBASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 AC092171.3-201ENST00000610122 2651 ntBASIC18.68■□□□□ 0.58
CCDC65Q8IXS2 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms