Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
SKA3Q8IX90 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 AC116407.3-201ENST00000623905 1129 ntBASIC14.96□□□□□ -0.01
SKA3Q8IX90 PGM5P2-202ENST00000637225 1043 ntBASIC14.96□□□□□ -0.01
SKA3Q8IX90 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC14.96□□□□□ -0.01
SKA3Q8IX90 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.96□□□□□ -0.02
SKA3Q8IX90 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.02
SKA3Q8IX90 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.96□□□□□ -0.02
SKA3Q8IX90 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
SKA3Q8IX90 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
SKA3Q8IX90 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
SKA3Q8IX90 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
SKA3Q8IX90 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
SKA3Q8IX90 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 AC026396.1-201ENST00000419388 421 ntBASIC14.95□□□□□ -0.02
SKA3Q8IX90 PAWRP1-201ENST00000451083 565 ntBASIC14.95□□□□□ -0.02
SKA3Q8IX90 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 PENK-208ENST00000523051 772 ntTSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 LITAF-211ENST00000572255 516 ntTSL 4 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 AC005593.1-201ENST00000624894 515 ntBASIC14.95□□□□□ -0.02
SKA3Q8IX90 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC14.95□□□□□ -0.02
SKA3Q8IX90 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
SKA3Q8IX90 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 PCDH8P1-201ENST00000428983 2773 ntBASIC14.94□□□□□ -0.02
SKA3Q8IX90 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 AC079776.4-201ENST00000511039 504 ntBASIC14.94□□□□□ -0.02
SKA3Q8IX90 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 AC008667.4-201ENST00000607370 168 ntBASIC14.94□□□□□ -0.02
SKA3Q8IX90 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 AC117500.6-201ENST00000624871 588 ntBASIC14.94□□□□□ -0.02
SKA3Q8IX90 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14.94□□□□□ -0.02
SKA3Q8IX90 AF228730.7-201ENST00000641842 219 ntBASIC14.94□□□□□ -0.02
SKA3Q8IX90 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 AL121761.2-201ENST00000598007 1648 ntBASIC14.94□□□□□ -0.02
SKA3Q8IX90 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
SKA3Q8IX90 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC14.94□□□□□ -0.02
SKA3Q8IX90 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms