Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 USP32P1-208ENST00000506594 1164 ntBASIC13.84□□□□□ -0.19
VPS13CQ709C8 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 KRT8P44-201ENST00000441609 1350 ntBASIC13.84□□□□□ -0.19
VPS13CQ709C8 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC13.84□□□□□ -0.19
VPS13CQ709C8 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VPS13CQ709C8 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13CQ709C8 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.83□□□□□ -0.19
VPS13CQ709C8 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC13.83□□□□□ -0.19
VPS13CQ709C8 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.83□□□□□ -0.19
VPS13CQ709C8 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13CQ709C8 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13CQ709C8 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VPS13CQ709C8 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TTTY23B-201ENST00000442790 549 ntBASIC13.83□□□□□ -0.2
VPS13CQ709C8 CROCCP4-201ENST00000457096 498 ntBASIC13.83□□□□□ -0.2
VPS13CQ709C8 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TEX48-202ENST00000612244 662 ntTSL 3 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VPS13CQ709C8 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 AC134043.2-201ENST00000624206 2238 ntBASIC13.83□□□□□ -0.2
VPS13CQ709C8 TUBB1P2-201ENST00000422712 1306 ntBASIC13.83□□□□□ -0.2
VPS13CQ709C8 TUBB1P1-201ENST00000503144 1300 ntBASIC13.83□□□□□ -0.2
VPS13CQ709C8 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.83□□□□□ -0.2
VPS13CQ709C8 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VPS13CQ709C8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.82□□□□□ -0.2
VPS13CQ709C8 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13CQ709C8 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13CQ709C8 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC13.81□□□□□ -0.2
VPS13CQ709C8 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
VPS13CQ709C8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13CQ709C8 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13CQ709C8 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VPS13CQ709C8 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms