Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 AC046158.3-201ENST00000624947 2558 ntBASIC19.21■□□□□ 0.67
ATL3Q6DD88 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ATL3Q6DD88 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC19.21■□□□□ 0.67
ATL3Q6DD88 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.66
ATL3Q6DD88 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.66
ATL3Q6DD88 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 SCARNA2-201ENST00000458748 420 ntBASIC19.2■□□□□ 0.66
ATL3Q6DD88 POU5F1P6-201ENST00000466990 990 ntBASIC19.2■□□□□ 0.66
ATL3Q6DD88 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 AL596087.1-201ENST00000400979 1969 ntBASIC19.2■□□□□ 0.66
ATL3Q6DD88 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 LINC01144-201ENST00000626198 1710 ntBASIC19.2■□□□□ 0.66
ATL3Q6DD88 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ATL3Q6DD88 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
ATL3Q6DD88 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 AC005052.1-201ENST00000625181 2492 ntBASIC19.19■□□□□ 0.66
ATL3Q6DD88 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 WDR53-204ENST00000433160 887 ntTSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 KRT18P31-201ENST00000506277 1292 ntBASIC19.19■□□□□ 0.66
ATL3Q6DD88 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 SART3-203ENST00000546611 1184 ntBASIC19.19■□□□□ 0.66
ATL3Q6DD88 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 RNF151-202ENST00000569210 853 ntTSL 2 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 AL353732.1-201ENST00000569618 1459 ntBASIC19.19■□□□□ 0.66
ATL3Q6DD88 AC007950.2-201ENST00000615045 2347 ntBASIC19.19■□□□□ 0.66
ATL3Q6DD88 PI4KAP1-204ENST00000612579 1703 ntBASIC19.19■□□□□ 0.66
ATL3Q6DD88 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC19.19■□□□□ 0.66
ATL3Q6DD88 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
ATL3Q6DD88 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATL3Q6DD88 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 LINC02199-201ENST00000506655 2702 ntBASIC19.18■□□□□ 0.66
ATL3Q6DD88 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
ATL3Q6DD88 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC19.18■□□□□ 0.66
ATL3Q6DD88 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms