Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
KRT39Q6A163 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.18■□□□□ 0.5
KRT39Q6A163 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.18■□□□□ 0.5
KRT39Q6A163 POLD4-207ENST00000531239 584 ntTSL 2 BASIC18.18■□□□□ 0.5
KRT39Q6A163 AC087641.1-201ENST00000557561 1021 ntBASIC18.18■□□□□ 0.5
KRT39Q6A163 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.18■□□□□ 0.5
KRT39Q6A163 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 AP001350.2-201ENST00000625104 1094 ntBASIC18.18■□□□□ 0.5
KRT39Q6A163 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
KRT39Q6A163 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
KRT39Q6A163 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.18■□□□□ 0.5
KRT39Q6A163 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC18.18■□□□□ 0.5
KRT39Q6A163 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.18■□□□□ 0.5
KRT39Q6A163 UBALD1-205ENST00000590891 2641 ntBASIC18.18■□□□□ 0.5
KRT39Q6A163 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
KRT39Q6A163 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC18.17■□□□□ 0.5
KRT39Q6A163 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 AC104109.2-201ENST00000602919 1418 ntBASIC18.17■□□□□ 0.5
KRT39Q6A163 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
KRT39Q6A163 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
KRT39Q6A163 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.17■□□□□ 0.5
KRT39Q6A163 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
KRT39Q6A163 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC18.17■□□□□ 0.5
KRT39Q6A163 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
KRT39Q6A163 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC18.17■□□□□ 0.5
KRT39Q6A163 CYP2A7P1-201ENST00000595391 815 ntBASIC18.17■□□□□ 0.5
KRT39Q6A163 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.17■□□□□ 0.5
KRT39Q6A163 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
KRT39Q6A163 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC18.16■□□□□ 0.5
KRT39Q6A163 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.16■□□□□ 0.5
KRT39Q6A163 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 IGLL3P-201ENST00000412472 434 ntBASIC18.16■□□□□ 0.5
KRT39Q6A163 AL590627.1-203ENST00000421194 1026 ntBASIC18.16■□□□□ 0.5
KRT39Q6A163 HCG4B-203ENST00000450128 991 ntBASIC18.16■□□□□ 0.5
KRT39Q6A163 RPL13AP23-201ENST00000480739 586 ntBASIC18.16■□□□□ 0.5
KRT39Q6A163 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 AC034105.1-201ENST00000563488 319 ntBASIC18.16■□□□□ 0.5
KRT39Q6A163 SIGLEC29P-201ENST00000599873 1114 ntBASIC18.16■□□□□ 0.5
KRT39Q6A163 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 BX640515.1-201ENST00000617215 977 ntBASIC18.16■□□□□ 0.5
KRT39Q6A163 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
KRT39Q6A163 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
KRT39Q6A163 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.16■□□□□ 0.5
KRT39Q6A163 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
KRT39Q6A163 KRT8P39-201ENST00000396270 1433 ntBASIC18.15■□□□□ 0.5
KRT39Q6A163 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
KRT39Q6A163 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
KRT39Q6A163 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
KRT39Q6A163 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC18.15■□□□□ 0.5
KRT39Q6A163 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 RPL18-209ENST00000550645 463 ntTSL 5 BASIC18.15■□□□□ 0.5
KRT39Q6A163 RPL18-214ENST00000552588 559 ntTSL 3 BASIC18.15■□□□□ 0.5
KRT39Q6A163 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
KRT39Q6A163 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms