Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.62■□□□□ 0.41
HDAC4P56524 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.62■□□□□ 0.41
HDAC4P56524 MST1L-201ENST00000442552 2185 ntBASIC17.62■□□□□ 0.41
HDAC4P56524 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HDAC4P56524 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.61■□□□□ 0.41
HDAC4P56524 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.61■□□□□ 0.41
HDAC4P56524 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.61■□□□□ 0.41
HDAC4P56524 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.61■□□□□ 0.41
HDAC4P56524 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.61■□□□□ 0.41
HDAC4P56524 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
HDAC4P56524 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.61■□□□□ 0.41
HDAC4P56524 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HDAC4P56524 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.61■□□□□ 0.41
HDAC4P56524 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.61■□□□□ 0.41
HDAC4P56524 AP002490.2-201ENST00000524791 560 ntBASIC17.61■□□□□ 0.41
HDAC4P56524 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.61■□□□□ 0.41
HDAC4P56524 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.61■□□□□ 0.41
HDAC4P56524 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.61■□□□□ 0.41
HDAC4P56524 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.61■□□□□ 0.41
HDAC4P56524 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.61■□□□□ 0.41
HDAC4P56524 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HDAC4P56524 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 CYP51A1P2-201ENST00000419457 1499 ntBASIC17.61■□□□□ 0.41
HDAC4P56524 AC006277.1-201ENST00000624348 1610 ntBASIC17.61■□□□□ 0.41
HDAC4P56524 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HDAC4P56524 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
HDAC4P56524 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
HDAC4P56524 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 AC026396.1-201ENST00000419388 421 ntBASIC17.6■□□□□ 0.41
HDAC4P56524 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.6■□□□□ 0.41
HDAC4P56524 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.6■□□□□ 0.41
HDAC4P56524 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.6■□□□□ 0.41
HDAC4P56524 MPDU1-223ENST00000582151 728 ntBASIC17.6■□□□□ 0.41
HDAC4P56524 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
HDAC4P56524 AC013467.2-201ENST00000605472 835 ntBASIC17.6■□□□□ 0.41
HDAC4P56524 AC129492.6-201ENST00000611383 1305 ntBASIC17.6■□□□□ 0.41
HDAC4P56524 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.6■□□□□ 0.41
HDAC4P56524 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 SLC22A20-204ENST00000530038 1673 ntBASIC17.6■□□□□ 0.41
HDAC4P56524 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.6■□□□□ 0.41
HDAC4P56524 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
HDAC4P56524 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HDAC4P56524 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.6■□□□□ 0.41
HDAC4P56524 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HDAC4P56524 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.6■□□□□ 0.41
HDAC4P56524 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC4P56524 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.59■□□□□ 0.41
HDAC4P56524 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.59■□□□□ 0.41
HDAC4P56524 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.59■□□□□ 0.41
HDAC4P56524 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.59■□□□□ 0.41
HDAC4P56524 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC4P56524 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.59■□□□□ 0.41
HDAC4P56524 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.59■□□□□ 0.41
HDAC4P56524 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.59■□□□□ 0.41
HDAC4P56524 AC079776.4-201ENST00000511039 504 ntBASIC17.59■□□□□ 0.41
HDAC4P56524 MIR4492-201ENST00000581627 80 ntBASIC17.59■□□□□ 0.41
HDAC4P56524 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC17.59■□□□□ 0.41
HDAC4P56524 AC010654.1-201ENST00000615722 808 ntBASIC17.59■□□□□ 0.41
HDAC4P56524 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC17.59■□□□□ 0.41
HDAC4P56524 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
HDAC4P56524 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms