Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
PKNOX1P55347 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.25
PKNOX1P55347 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
PKNOX1P55347 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PKNOX1P55347 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
PKNOX1P55347 AC103702.1-201ENST00000548801 2630 ntBASIC16.58■□□□□ 0.25
PKNOX1P55347 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
PKNOX1P55347 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.58■□□□□ 0.24
PKNOX1P55347 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.58■□□□□ 0.24
PKNOX1P55347 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
PKNOX1P55347 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
PKNOX1P55347 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 ABCD1P5-201ENST00000445663 754 ntBASIC16.58■□□□□ 0.24
PKNOX1P55347 FAM210CP-201ENST00000445714 574 ntBASIC16.58■□□□□ 0.24
PKNOX1P55347 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.58■□□□□ 0.24
PKNOX1P55347 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.58■□□□□ 0.24
PKNOX1P55347 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC16.58■□□□□ 0.24
PKNOX1P55347 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
PKNOX1P55347 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.58■□□□□ 0.24
PKNOX1P55347 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.58■□□□□ 0.24
PKNOX1P55347 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.58■□□□□ 0.24
PKNOX1P55347 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.58■□□□□ 0.24
PKNOX1P55347 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
PKNOX1P55347 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC16.58■□□□□ 0.24
PKNOX1P55347 AC097637.2-201ENST00000624096 1997 ntBASIC16.58■□□□□ 0.24
PKNOX1P55347 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.24
PKNOX1P55347 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.58■□□□□ 0.24
PKNOX1P55347 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PKNOX1P55347 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
PKNOX1P55347 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PKNOX1P55347 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.57■□□□□ 0.24
PKNOX1P55347 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PKNOX1P55347 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 AL021920.2-201ENST00000624828 1351 ntBASIC16.57■□□□□ 0.24
PKNOX1P55347 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.57■□□□□ 0.24
PKNOX1P55347 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
PKNOX1P55347 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.57■□□□□ 0.24
PKNOX1P55347 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 BET1L-206ENST00000486280 665 ntTSL 3 BASIC16.57■□□□□ 0.24
PKNOX1P55347 AP000867.3-201ENST00000524675 377 ntBASIC16.57■□□□□ 0.24
PKNOX1P55347 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.57■□□□□ 0.24
PKNOX1P55347 CCNC-219ENST00000627680 896 ntTSL 5 BASIC16.57■□□□□ 0.24
PKNOX1P55347 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.57■□□□□ 0.24
PKNOX1P55347 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
PKNOX1P55347 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.57■□□□□ 0.24
PKNOX1P55347 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PKNOX1P55347 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PKNOX1P55347 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PKNOX1P55347 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.56■□□□□ 0.24
PKNOX1P55347 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PKNOX1P55347 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 AC079776.2-201ENST00000641154 1609 ntBASIC16.56■□□□□ 0.24
PKNOX1P55347 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.56■□□□□ 0.24
PKNOX1P55347 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.56■□□□□ 0.24
PKNOX1P55347 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PKNOX1P55347 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms