Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH4P55283 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.17■□□□□ 0.34
CDH4P55283 AC021097.1-201ENST00000607902 574 ntBASIC17.17■□□□□ 0.34
CDH4P55283 GPALPP1-207ENST00000611650 899 ntBASIC17.17■□□□□ 0.34
CDH4P55283 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CDH4P55283 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH4P55283 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
CDH4P55283 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.17■□□□□ 0.34
CDH4P55283 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC17.17■□□□□ 0.34
CDH4P55283 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CDH4P55283 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
CDH4P55283 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH4P55283 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
CDH4P55283 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.16■□□□□ 0.34
CDH4P55283 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH4P55283 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.16■□□□□ 0.34
CDH4P55283 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH4P55283 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.16■□□□□ 0.34
CDH4P55283 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.16■□□□□ 0.34
CDH4P55283 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CDH4P55283 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
CDH4P55283 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CDH4P55283 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 AL671710.1-201ENST00000610245 2349 ntBASIC17.16■□□□□ 0.34
CDH4P55283 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC17.16■□□□□ 0.34
CDH4P55283 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CDH4P55283 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CDH4P55283 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDH4P55283 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH4P55283 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.15■□□□□ 0.34
CDH4P55283 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
CDH4P55283 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 AC004967.1-201ENST00000453589 447 ntBASIC17.15■□□□□ 0.34
CDH4P55283 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH4P55283 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.15■□□□□ 0.34
CDH4P55283 FAM86C2P-203ENST00000528684 1004 ntBASIC17.15■□□□□ 0.34
CDH4P55283 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.15■□□□□ 0.34
CDH4P55283 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH4P55283 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC17.15■□□□□ 0.34
CDH4P55283 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
CDH4P55283 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDH4P55283 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CDH4P55283 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CDH4P55283 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CDH4P55283 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.15■□□□□ 0.34
CDH4P55283 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CDH4P55283 AC080080.1-201ENST00000625121 2420 ntBASIC17.15■□□□□ 0.34
CDH4P55283 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC17.14■□□□□ 0.34
CDH4P55283 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
CDH4P55283 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.14■□□□□ 0.34
CDH4P55283 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH4P55283 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CDH4P55283 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH4P55283 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CDH4P55283 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.14■□□□□ 0.33
CDH4P55283 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CDH4P55283 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.14■□□□□ 0.33
CDH4P55283 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms