Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PTPN9P43378 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.48■□□□□ 0.39
PTPN9P43378 UBALD1-205ENST00000590891 2641 ntBASIC17.48■□□□□ 0.39
PTPN9P43378 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.48■□□□□ 0.39
PTPN9P43378 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.47■□□□□ 0.39
PTPN9P43378 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC17.47■□□□□ 0.39
PTPN9P43378 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.47■□□□□ 0.39
PTPN9P43378 HMGA1P7-201ENST00000406908 502 ntBASIC17.47■□□□□ 0.39
PTPN9P43378 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.47■□□□□ 0.39
PTPN9P43378 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.47■□□□□ 0.39
PTPN9P43378 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.47■□□□□ 0.39
PTPN9P43378 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC17.47■□□□□ 0.39
PTPN9P43378 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.47■□□□□ 0.39
PTPN9P43378 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
PTPN9P43378 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PTPN9P43378 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.47■□□□□ 0.39
PTPN9P43378 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PTPN9P43378 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PTPN9P43378 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
PTPN9P43378 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PTPN9P43378 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.46■□□□□ 0.39
PTPN9P43378 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PTPN9P43378 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.46■□□□□ 0.39
PTPN9P43378 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
PTPN9P43378 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PTPN9P43378 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
PTPN9P43378 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.46■□□□□ 0.39
PTPN9P43378 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.46■□□□□ 0.39
PTPN9P43378 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.46■□□□□ 0.39
PTPN9P43378 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.46■□□□□ 0.39
PTPN9P43378 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.46■□□□□ 0.39
PTPN9P43378 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
PTPN9P43378 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.46■□□□□ 0.39
PTPN9P43378 AC007064.4-201ENST00000637740 555 ntBASIC17.46■□□□□ 0.39
PTPN9P43378 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
PTPN9P43378 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PTPN9P43378 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
PTPN9P43378 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PTPN9P43378 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PTPN9P43378 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PTPN9P43378 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.46■□□□□ 0.38
PTPN9P43378 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.38
PTPN9P43378 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.46■□□□□ 0.38
PTPN9P43378 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PTPN9P43378 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PTPN9P43378 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PTPN9P43378 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms