Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.38■□□□□ 0.21
HNF4AP41235 AF228730.7-201ENST00000641842 219 ntBASIC16.38■□□□□ 0.21
HNF4AP41235 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
HNF4AP41235 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
HNF4AP41235 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.38■□□□□ 0.21
HNF4AP41235 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
HNF4AP41235 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
HNF4AP41235 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
HNF4AP41235 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.37■□□□□ 0.21
HNF4AP41235 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.37■□□□□ 0.21
HNF4AP41235 AP002414.3-201ENST00000589352 1468 ntBASIC16.37■□□□□ 0.21
HNF4AP41235 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.37■□□□□ 0.21
HNF4AP41235 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.37■□□□□ 0.21
HNF4AP41235 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 ELK2BP-201ENST00000415014 1224 ntBASIC16.37■□□□□ 0.21
HNF4AP41235 AL031284.1-201ENST00000419297 478 ntBASIC16.37■□□□□ 0.21
HNF4AP41235 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 PAWRP1-201ENST00000451083 565 ntBASIC16.37■□□□□ 0.21
HNF4AP41235 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.37■□□□□ 0.21
HNF4AP41235 FAM215A-202ENST00000632077 792 ntBASIC16.37■□□□□ 0.21
HNF4AP41235 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.37■□□□□ 0.21
HNF4AP41235 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.37■□□□□ 0.21
HNF4AP41235 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
HNF4AP41235 LINC00895-201ENST00000629028 1637 ntBASIC16.37■□□□□ 0.21
HNF4AP41235 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
HNF4AP41235 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HNF4AP41235 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 AL645728.1-201ENST00000366221 2101 ntBASIC16.36■□□□□ 0.21
HNF4AP41235 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 RPS2P28-201ENST00000314255 741 ntBASIC16.36■□□□□ 0.21
HNF4AP41235 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.36■□□□□ 0.21
HNF4AP41235 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.36■□□□□ 0.21
HNF4AP41235 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.36■□□□□ 0.21
HNF4AP41235 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.36■□□□□ 0.21
HNF4AP41235 SLC25A6P4-201ENST00000586535 553 ntBASIC16.36■□□□□ 0.21
HNF4AP41235 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
HNF4AP41235 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
HNF4AP41235 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HNF4AP41235 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms