Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.3□□□□□ -0.12
USF1P22415 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USF1P22415 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 AC002056.1-201ENST00000395613 760 ntBASIC14.29□□□□□ -0.12
USF1P22415 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.29□□□□□ -0.12
USF1P22415 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.29□□□□□ -0.12
USF1P22415 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC14.29□□□□□ -0.12
USF1P22415 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.29□□□□□ -0.12
USF1P22415 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC14.29□□□□□ -0.12
USF1P22415 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.29□□□□□ -0.12
USF1P22415 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.29□□□□□ -0.12
USF1P22415 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC14.29□□□□□ -0.12
USF1P22415 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 TNRC18P3-201ENST00000441896 2691 ntBASIC14.29□□□□□ -0.12
USF1P22415 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 AL121761.2-201ENST00000598007 1648 ntBASIC14.29□□□□□ -0.12
USF1P22415 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
USF1P22415 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC14.29□□□□□ -0.12
USF1P22415 AC124067.4-201ENST00000519691 2379 ntBASIC14.29□□□□□ -0.12
USF1P22415 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
USF1P22415 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.29□□□□□ -0.12
USF1P22415 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
USF1P22415 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 AL139400.1-201ENST00000366220 510 ntBASIC14.28□□□□□ -0.12
USF1P22415 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC14.28□□□□□ -0.12
USF1P22415 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
USF1P22415 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 WDR53-203ENST00000429115 683 ntTSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC14.28□□□□□ -0.12
USF1P22415 GATB-205ENST00000508611 605 ntTSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC14.28□□□□□ -0.12
USF1P22415 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.28□□□□□ -0.12
USF1P22415 BSG-214ENST00000614867 960 ntTSL 3 BASIC14.28□□□□□ -0.12
USF1P22415 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC14.28□□□□□ -0.12
USF1P22415 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC14.28□□□□□ -0.12
USF1P22415 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
USF1P22415 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
USF1P22415 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC14.27□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms