Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SDC3O75056 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.43■□□□□ 0.22
SDC3O75056 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC16.43■□□□□ 0.22
SDC3O75056 SPDYE7P-202ENST00000420373 878 ntBASIC16.43■□□□□ 0.22
SDC3O75056 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.43■□□□□ 0.22
SDC3O75056 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.43■□□□□ 0.22
SDC3O75056 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.43■□□□□ 0.22
SDC3O75056 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.43■□□□□ 0.22
SDC3O75056 AP001350.2-201ENST00000625104 1094 ntBASIC16.43■□□□□ 0.22
SDC3O75056 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
SDC3O75056 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC16.43■□□□□ 0.22
SDC3O75056 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 AC134043.2-201ENST00000624206 2238 ntBASIC16.43■□□□□ 0.22
SDC3O75056 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.43■□□□□ 0.22
SDC3O75056 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SDC3O75056 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
SDC3O75056 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SDC3O75056 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.43■□□□□ 0.22
SDC3O75056 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.43■□□□□ 0.22
SDC3O75056 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
SDC3O75056 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.42■□□□□ 0.22
SDC3O75056 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.42■□□□□ 0.22
SDC3O75056 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.42■□□□□ 0.22
SDC3O75056 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.42■□□□□ 0.22
SDC3O75056 ALG1L8P-201ENST00000533887 760 ntBASIC16.42■□□□□ 0.22
SDC3O75056 AC140878.1-201ENST00000565277 250 ntBASIC16.42■□□□□ 0.22
SDC3O75056 AP000842.3-202ENST00000569238 1080 ntBASIC16.42■□□□□ 0.22
SDC3O75056 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.42■□□□□ 0.22
SDC3O75056 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.42■□□□□ 0.22
SDC3O75056 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.42■□□□□ 0.22
SDC3O75056 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.42■□□□□ 0.22
SDC3O75056 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.42■□□□□ 0.22
SDC3O75056 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SDC3O75056 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SDC3O75056 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SDC3O75056 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.42■□□□□ 0.22
SDC3O75056 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.41■□□□□ 0.22
SDC3O75056 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.41■□□□□ 0.22
SDC3O75056 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
SDC3O75056 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.41■□□□□ 0.22
SDC3O75056 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.41■□□□□ 0.22
SDC3O75056 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC16.41■□□□□ 0.22
SDC3O75056 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.41■□□□□ 0.22
SDC3O75056 TSPY16P-201ENST00000449843 468 ntBASIC16.41■□□□□ 0.22
SDC3O75056 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 GATD1-206ENST00000526325 756 ntTSL 5 BASIC16.41■□□□□ 0.22
SDC3O75056 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 MPDU1-223ENST00000582151 728 ntBASIC16.41■□□□□ 0.22
SDC3O75056 AC008267.7-201ENST00000624570 1194 ntBASIC16.41■□□□□ 0.22
SDC3O75056 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.41■□□□□ 0.22
SDC3O75056 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.41■□□□□ 0.22
SDC3O75056 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
SDC3O75056 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.41■□□□□ 0.22
SDC3O75056 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
SDC3O75056 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SDC3O75056 AC012313.1-201ENST00000593393 3059 ntBASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms