Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
LMX1BO60663 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LMX1BO60663 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
LMX1BO60663 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.85□□□□□ -0.03
LMX1BO60663 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LMX1BO60663 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC14.85□□□□□ -0.03
LMX1BO60663 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 AP001269.4-201ENST00000609611 512 ntBASIC14.85□□□□□ -0.03
LMX1BO60663 AL691403.2-201ENST00000618460 490 ntBASIC14.85□□□□□ -0.03
LMX1BO60663 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.85□□□□□ -0.03
LMX1BO60663 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LMX1BO60663 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
LMX1BO60663 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LMX1BO60663 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LMX1BO60663 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.85□□□□□ -0.03
LMX1BO60663 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
LMX1BO60663 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 HLA-A-202ENST00000376806 1854 ntBASIC14.84□□□□□ -0.03
LMX1BO60663 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 FUK-207ENST00000571514 3054 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
LMX1BO60663 GCK-202ENST00000345378 2421 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 FUOM-202ENST00000368551 628 ntTSL 3 BASIC14.84□□□□□ -0.03
LMX1BO60663 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC14.84□□□□□ -0.03
LMX1BO60663 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 AC145285.3-201ENST00000564603 959 ntBASIC14.84□□□□□ -0.03
LMX1BO60663 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC14.84□□□□□ -0.03
LMX1BO60663 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 PMPCAP1-201ENST00000508114 1576 ntBASIC14.84□□□□□ -0.03
LMX1BO60663 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC14.84□□□□□ -0.03
LMX1BO60663 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LMX1BO60663 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.03
LMX1BO60663 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 AC104109.2-201ENST00000602919 1418 ntBASIC14.83□□□□□ -0.03
LMX1BO60663 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC14.83□□□□□ -0.03
LMX1BO60663 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.83□□□□□ -0.03
LMX1BO60663 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.03
LMX1BO60663 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.83□□□□□ -0.03
LMX1BO60663 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC14.83□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms