Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
GFRA3O60609 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
GFRA3O60609 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
GFRA3O60609 AC138028.6-201ENST00000616106 1482 ntBASIC16.16■□□□□ 0.18
GFRA3O60609 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.16■□□□□ 0.18
GFRA3O60609 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
GFRA3O60609 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.16■□□□□ 0.18
GFRA3O60609 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC16.16■□□□□ 0.18
GFRA3O60609 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.16■□□□□ 0.18
GFRA3O60609 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.16■□□□□ 0.18
GFRA3O60609 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC16.16■□□□□ 0.18
GFRA3O60609 AC098859.1-201ENST00000502915 1238 ntBASIC16.16■□□□□ 0.18
GFRA3O60609 FAM86HP-204ENST00000513466 959 ntBASIC16.16■□□□□ 0.18
GFRA3O60609 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC16.16■□□□□ 0.18
GFRA3O60609 MIR4750-201ENST00000584564 56 ntBASIC16.16■□□□□ 0.18
GFRA3O60609 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
GFRA3O60609 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
GFRA3O60609 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
GFRA3O60609 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
GFRA3O60609 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
GFRA3O60609 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.15■□□□□ 0.18
GFRA3O60609 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.15■□□□□ 0.18
GFRA3O60609 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC16.15■□□□□ 0.18
GFRA3O60609 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.15■□□□□ 0.18
GFRA3O60609 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC16.15■□□□□ 0.18
GFRA3O60609 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC16.15■□□□□ 0.18
GFRA3O60609 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.15■□□□□ 0.18
GFRA3O60609 RARRES2P5-201ENST00000564013 466 ntBASIC16.15■□□□□ 0.18
GFRA3O60609 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.15■□□□□ 0.18
GFRA3O60609 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.15■□□□□ 0.18
GFRA3O60609 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.15■□□□□ 0.18
GFRA3O60609 AL607033.1-201ENST00000623900 1599 ntBASIC16.15■□□□□ 0.18
GFRA3O60609 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
GFRA3O60609 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC16.15■□□□□ 0.18
GFRA3O60609 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
GFRA3O60609 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 AC116562.4-201ENST00000641316 2276 ntBASIC16.15■□□□□ 0.18
GFRA3O60609 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC16.15■□□□□ 0.18
GFRA3O60609 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
GFRA3O60609 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
GFRA3O60609 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
GFRA3O60609 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.14■□□□□ 0.17
GFRA3O60609 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
GFRA3O60609 AC234644.1-201ENST00000406065 370 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 FNTAP2-201ENST00000430308 634 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 SERPINA7P1-201ENST00000443077 631 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 RHOA-206ENST00000454011 889 ntTSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.14■□□□□ 0.17
GFRA3O60609 TIMM17BP1-201ENST00000545713 516 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.14■□□□□ 0.17
GFRA3O60609 DUX4L45-201ENST00000566406 1057 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 AC092337.1-201ENST00000568699 1129 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.14■□□□□ 0.17
GFRA3O60609 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
GFRA3O60609 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC16.14■□□□□ 0.17
GFRA3O60609 AC133539.2-201ENST00000604757 467 ntBASIC16.14■□□□□ 0.17
GFRA3O60609 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms