Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC092053.1-201ENST00000605787 1936 ntBASIC17.08■□□□□ 0.32
HOXC11O43248 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC11O43248 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
HOXC11O43248 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HOXC11O43248 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 AC006277.1-201ENST00000624348 1610 ntBASIC17.07■□□□□ 0.32
HOXC11O43248 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.07■□□□□ 0.32
HOXC11O43248 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 AC142381.1-201ENST00000426099 345 ntBASIC17.07■□□□□ 0.32
HOXC11O43248 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.07■□□□□ 0.32
HOXC11O43248 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC11O43248 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC11O43248 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.07■□□□□ 0.32
HOXC11O43248 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.07■□□□□ 0.32
HOXC11O43248 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.07■□□□□ 0.32
HOXC11O43248 MIR6080-201ENST00000617359 66 ntBASIC17.07■□□□□ 0.32
HOXC11O43248 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 AC141586.5-201ENST00000624546 2050 ntBASIC17.07■□□□□ 0.32
HOXC11O43248 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.07■□□□□ 0.32
HOXC11O43248 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.07■□□□□ 0.32
HOXC11O43248 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HOXC11O43248 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HOXC11O43248 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXC11O43248 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.06■□□□□ 0.32
HOXC11O43248 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
HOXC11O43248 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXC11O43248 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.06■□□□□ 0.32
HOXC11O43248 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXC11O43248 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXC11O43248 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 CD81-202ENST00000381036 880 ntTSL 3 BASIC17.06■□□□□ 0.32
HOXC11O43248 MIR943-201ENST00000401286 94 ntBASIC17.06■□□□□ 0.32
HOXC11O43248 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.06■□□□□ 0.32
HOXC11O43248 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 AC093214.1-201ENST00000511688 1107 ntBASIC17.06■□□□□ 0.32
HOXC11O43248 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.06■□□□□ 0.32
HOXC11O43248 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.06■□□□□ 0.32
HOXC11O43248 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXC11O43248 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
HOXC11O43248 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.06■□□□□ 0.32
HOXC11O43248 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
HOXC11O43248 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC11O43248 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC17.05■□□□□ 0.32
HOXC11O43248 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HOXC11O43248 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
HOXC11O43248 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
HOXC11O43248 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms