Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MTRF1LP2-201ENST00000506027 1122 ntBASIC21.18■□□□□ 0.98
NPHP1O15259 AC097493.3-201ENST00000509725 367 ntBASIC21.18■□□□□ 0.98
NPHP1O15259 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.18■□□□□ 0.98
NPHP1O15259 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC21.18■□□□□ 0.98
NPHP1O15259 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.18■□□□□ 0.98
NPHP1O15259 AC008267.7-201ENST00000624570 1194 ntBASIC21.18■□□□□ 0.98
NPHP1O15259 HFE2-206ENST00000634927 506 ntTSL 4 BASIC21.18■□□□□ 0.98
NPHP1O15259 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
NPHP1O15259 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
NPHP1O15259 AC012317.2-201ENST00000623305 2251 ntBASIC21.18■□□□□ 0.98
NPHP1O15259 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
NPHP1O15259 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
NPHP1O15259 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
NPHP1O15259 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC21.18■□□□□ 0.98
NPHP1O15259 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
NPHP1O15259 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP1O15259 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
NPHP1O15259 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP1O15259 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP1O15259 AP001350.2-201ENST00000625104 1094 ntBASIC21.17■□□□□ 0.98
NPHP1O15259 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.17■□□□□ 0.98
NPHP1O15259 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
NPHP1O15259 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP1O15259 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP1O15259 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
NPHP1O15259 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC21.17■□□□□ 0.98
NPHP1O15259 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC21.17■□□□□ 0.98
NPHP1O15259 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
NPHP1O15259 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 NME9-203ENST00000383180 2133 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP1O15259 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
NPHP1O15259 ABALON-201ENST00000629058 1903 ntBASIC21.16■□□□□ 0.98
NPHP1O15259 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP1O15259 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
NPHP1O15259 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.16■□□□□ 0.98
NPHP1O15259 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
NPHP1O15259 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.16■□□□□ 0.98
NPHP1O15259 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 AC027307.3-201ENST00000594262 1100 ntBASIC21.16■□□□□ 0.98
NPHP1O15259 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
NPHP1O15259 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
NPHP1O15259 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP1O15259 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.15■□□□□ 0.98
NPHP1O15259 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NPHP1O15259 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.15■□□□□ 0.98
NPHP1O15259 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
NPHP1O15259 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC21.15■□□□□ 0.98
NPHP1O15259 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC21.15■□□□□ 0.98
NPHP1O15259 AP000842.3-202ENST00000569238 1080 ntBASIC21.15■□□□□ 0.98
NPHP1O15259 MIR4453-201ENST00000584019 89 ntBASIC21.15■□□□□ 0.98
NPHP1O15259 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
NPHP1O15259 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP1O15259 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
NPHP1O15259 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP1O15259 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
NPHP1O15259 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC21.15■□□□□ 0.98
NPHP1O15259 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP1O15259 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
NPHP1O15259 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC21.15■□□□□ 0.98
NPHP1O15259 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms