Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 FAM185BP-201ENST00000443595 716 ntBASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 AC112482.1-201ENST00000492080 688 ntBASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 OR6D1P-203ENST00000641209 4860 ntBASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
COL4A3BPQ9Y5P4 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 KRT19P2-202ENST00000557173 1012 ntBASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 PDPK2P-202ENST00000562415 1191 ntBASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL4A3BPQ9Y5P4 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 AC129492.6-201ENST00000611383 1305 ntBASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COL4A3BPQ9Y5P4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 AC023141.13-201ENST00000604991 943 ntBASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 ACTL9-202ENST00000612068 1252 ntBASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 AC055717.3-201ENST00000622967 595 ntBASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 AC007064.4-201ENST00000637740 555 ntBASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.83■□□□□ 0.6
COL4A3BPQ9Y5P4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms