Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 AL590787.1-201ENST00000568856 1315 ntBASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 C1R-202ENST00000536053 2347 ntTSL 2 BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLIP3Q96DZ5 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 LINC00304-203ENST00000565008 1864 ntBASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 AC055717.3-201ENST00000622967 595 ntBASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 AC079781.4-201ENST00000641908 219 ntBASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLIP3Q96DZ5 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.33■□□□□ 0.21
CLIP3Q96DZ5 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.33■□□□□ 0.2
CLIP3Q96DZ5 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
CLIP3Q96DZ5 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms