Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.85■□□□□ 0.77
BRF1Q92994 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRF1Q92994 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.85■□□□□ 0.77
BRF1Q92994 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
BRF1Q92994 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRF1Q92994 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.85■□□□□ 0.77
BRF1Q92994 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
BRF1Q92994 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRF1Q92994 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
BRF1Q92994 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRF1Q92994 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.85■□□□□ 0.77
BRF1Q92994 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BRF1Q92994 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
BRF1Q92994 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
BRF1Q92994 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.85■□□□□ 0.77
BRF1Q92994 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
BRF1Q92994 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC19.84■□□□□ 0.77
BRF1Q92994 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.84■□□□□ 0.77
BRF1Q92994 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.84■□□□□ 0.77
BRF1Q92994 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.84■□□□□ 0.77
BRF1Q92994 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.84■□□□□ 0.77
BRF1Q92994 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC19.84■□□□□ 0.77
BRF1Q92994 OR7E47P-204ENST00000575924 449 ntBASIC19.84■□□□□ 0.77
BRF1Q92994 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.84■□□□□ 0.77
BRF1Q92994 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
BRF1Q92994 AC004790.2-201ENST00000623588 572 ntBASIC19.84■□□□□ 0.77
BRF1Q92994 AC116407.3-201ENST00000623905 1129 ntBASIC19.84■□□□□ 0.77
BRF1Q92994 PGM5P2-202ENST00000637225 1043 ntBASIC19.84■□□□□ 0.77
BRF1Q92994 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC19.84■□□□□ 0.77
BRF1Q92994 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.84■□□□□ 0.77
BRF1Q92994 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
BRF1Q92994 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 SLC22A20-204ENST00000530038 1673 ntBASIC19.84■□□□□ 0.77
BRF1Q92994 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.84■□□□□ 0.77
BRF1Q92994 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
BRF1Q92994 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.83■□□□□ 0.77
BRF1Q92994 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.83■□□□□ 0.77
BRF1Q92994 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
BRF1Q92994 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
BRF1Q92994 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 SNX33P1-201ENST00000592116 1762 ntBASIC19.83■□□□□ 0.77
BRF1Q92994 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC19.83■□□□□ 0.77
BRF1Q92994 PMS2P1-201ENST00000431037 1228 ntBASIC19.83■□□□□ 0.77
BRF1Q92994 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BRF1Q92994 AC098831.1-202ENST00000438821 336 ntBASIC19.83■□□□□ 0.77
BRF1Q92994 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.83■□□□□ 0.77
BRF1Q92994 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.83■□□□□ 0.77
BRF1Q92994 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
BRF1Q92994 MIR4492-201ENST00000581627 80 ntBASIC19.83■□□□□ 0.77
BRF1Q92994 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.83■□□□□ 0.76
BRF1Q92994 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
BRF1Q92994 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
BRF1Q92994 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
BRF1Q92994 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
BRF1Q92994 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
BRF1Q92994 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
BRF1Q92994 AL671710.1-201ENST00000610245 2349 ntBASIC19.82■□□□□ 0.76
BRF1Q92994 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.82■□□□□ 0.76
BRF1Q92994 AL662844.4-201ENST00000606367 2838 ntBASIC19.82■□□□□ 0.76
BRF1Q92994 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
BRF1Q92994 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
BRF1Q92994 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
BRF1Q92994 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.82■□□□□ 0.76
BRF1Q92994 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.82■□□□□ 0.76
BRF1Q92994 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC19.82■□□□□ 0.76
BRF1Q92994 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.82■□□□□ 0.76
BRF1Q92994 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.82■□□□□ 0.76
BRF1Q92994 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.82■□□□□ 0.76
BRF1Q92994 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BRF1Q92994 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.82■□□□□ 0.76
BRF1Q92994 AP001005.1-201ENST00000571755 1248 ntBASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms