Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC21.93■■□□□ 1.1
RTF1Q92541 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC21.93■■□□□ 1.1
RTF1Q92541 AC093520.2-201ENST00000561830 333 ntBASIC21.93■■□□□ 1.1
RTF1Q92541 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC21.93■■□□□ 1.1
RTF1Q92541 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC21.93■■□□□ 1.1
RTF1Q92541 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.93■■□□□ 1.1
RTF1Q92541 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 AC093028.1-201ENST00000622998 982 ntBASIC21.93■■□□□ 1.1
RTF1Q92541 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC21.93■■□□□ 1.1
RTF1Q92541 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
RTF1Q92541 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
RTF1Q92541 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC21.93■■□□□ 1.1
RTF1Q92541 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
RTF1Q92541 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
RTF1Q92541 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.92■■□□□ 1.1
RTF1Q92541 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTF1Q92541 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC21.92■■□□□ 1.1
RTF1Q92541 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
RTF1Q92541 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.92■■□□□ 1.1
RTF1Q92541 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
RTF1Q92541 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.92■■□□□ 1.1
RTF1Q92541 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC21.92■■□□□ 1.1
RTF1Q92541 SPCS2P4-201ENST00000436160 681 ntBASIC21.92■■□□□ 1.1
RTF1Q92541 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC21.92■■□□□ 1.1
RTF1Q92541 HLA-J-203ENST00000494367 1087 ntBASIC21.92■■□□□ 1.1
RTF1Q92541 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.92■■□□□ 1.1
RTF1Q92541 IGHV3-62-201ENST00000520057 340 ntBASIC21.92■■□□□ 1.1
RTF1Q92541 RFPL4AP1-201ENST00000530883 850 ntBASIC21.92■■□□□ 1.1
RTF1Q92541 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
RTF1Q92541 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC21.92■■□□□ 1.1
RTF1Q92541 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.92■■□□□ 1.1
RTF1Q92541 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC21.92■■□□□ 1.1
RTF1Q92541 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC21.92■■□□□ 1.1
RTF1Q92541 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC21.92■■□□□ 1.1
RTF1Q92541 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC21.92■■□□□ 1.1
RTF1Q92541 PCDHB18P-201ENST00000524813 2368 ntBASIC21.92■■□□□ 1.1
RTF1Q92541 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
RTF1Q92541 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTF1Q92541 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTF1Q92541 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
RTF1Q92541 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
RTF1Q92541 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
RTF1Q92541 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
RTF1Q92541 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.91■■□□□ 1.1
RTF1Q92541 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
RTF1Q92541 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC21.91■■□□□ 1.1
RTF1Q92541 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
RTF1Q92541 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
RTF1Q92541 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.91■■□□□ 1.1
RTF1Q92541 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.91■■□□□ 1.1
RTF1Q92541 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC21.91■■□□□ 1.1
RTF1Q92541 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC21.91■■□□□ 1.1
RTF1Q92541 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 AL355385.1-201ENST00000606123 409 ntBASIC21.91■■□□□ 1.1
RTF1Q92541 AC021097.1-201ENST00000607902 574 ntBASIC21.91■■□□□ 1.1
RTF1Q92541 AC009093.7-201ENST00000623853 1223 ntBASIC21.91■■□□□ 1.1
RTF1Q92541 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC21.91■■□□□ 1.1
RTF1Q92541 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 AC006277.1-201ENST00000624348 1610 ntBASIC21.91■■□□□ 1.1
RTF1Q92541 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
RTF1Q92541 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
RTF1Q92541 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RTF1Q92541 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
RTF1Q92541 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC21.9■■□□□ 1.1
RTF1Q92541 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 PNMT-202ENST00000394246 821 ntTSL 2 BASIC21.9■■□□□ 1.1
RTF1Q92541 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RTF1Q92541 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms