Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.64■□□□□ 0.41
HDAC4P56524 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC4P56524 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.64■□□□□ 0.41
HDAC4P56524 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.64■□□□□ 0.41
HDAC4P56524 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.64■□□□□ 0.41
HDAC4P56524 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 AC004790.2-201ENST00000623588 572 ntBASIC17.64■□□□□ 0.41
HDAC4P56524 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.64■□□□□ 0.41
HDAC4P56524 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HDAC4P56524 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
HDAC4P56524 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.64■□□□□ 0.41
HDAC4P56524 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HDAC4P56524 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HDAC4P56524 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
HDAC4P56524 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HDAC4P56524 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.64■□□□□ 0.41
HDAC4P56524 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.64■□□□□ 0.41
HDAC4P56524 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
HDAC4P56524 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
HDAC4P56524 LINC00895-201ENST00000629028 1637 ntBASIC17.63■□□□□ 0.41
HDAC4P56524 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 AC009947.1-201ENST00000444350 727 ntBASIC17.63■□□□□ 0.41
HDAC4P56524 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
HDAC4P56524 UNC93B6-202ENST00000528242 690 ntBASIC17.63■□□□□ 0.41
HDAC4P56524 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
HDAC4P56524 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.63■□□□□ 0.41
HDAC4P56524 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC17.63■□□□□ 0.41
HDAC4P56524 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
HDAC4P56524 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC17.63■□□□□ 0.41
HDAC4P56524 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC17.63■□□□□ 0.41
HDAC4P56524 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.63■□□□□ 0.41
HDAC4P56524 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.63■□□□□ 0.41
HDAC4P56524 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 AL603756.1-201ENST00000606511 2163 ntBASIC17.63■□□□□ 0.41
HDAC4P56524 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
HDAC4P56524 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.63■□□□□ 0.41
HDAC4P56524 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HDAC4P56524 AL391256.1-201ENST00000443260 1855 ntBASIC17.63■□□□□ 0.41
HDAC4P56524 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.62■□□□□ 0.41
HDAC4P56524 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HDAC4P56524 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.62■□□□□ 0.41
HDAC4P56524 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC17.62■□□□□ 0.41
HDAC4P56524 AC092171.3-201ENST00000610122 2651 ntBASIC17.62■□□□□ 0.41
HDAC4P56524 PC-204ENST00000524491 1714 ntTSL 2 BASIC17.62■□□□□ 0.41
HDAC4P56524 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 MRPL20P1-201ENST00000400819 433 ntBASIC17.62■□□□□ 0.41
HDAC4P56524 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
HDAC4P56524 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.62■□□□□ 0.41
HDAC4P56524 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.62■□□□□ 0.41
HDAC4P56524 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.62■□□□□ 0.41
HDAC4P56524 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 AC108751.1-201ENST00000490852 363 ntBASIC17.62■□□□□ 0.41
HDAC4P56524 RNA5SP415-201ENST00000517246 115 ntBASIC17.62■□□□□ 0.41
HDAC4P56524 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.62■□□□□ 0.41
HDAC4P56524 CD63-204ENST00000546939 779 ntTSL 3 BASIC17.62■□□□□ 0.41
HDAC4P56524 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.62■□□□□ 0.41
HDAC4P56524 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.62■□□□□ 0.41
HDAC4P56524 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.62■□□□□ 0.41
HDAC4P56524 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.62■□□□□ 0.41
HDAC4P56524 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.62■□□□□ 0.41
HDAC4P56524 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.62■□□□□ 0.41
HDAC4P56524 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
HDAC4P56524 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms