Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
PKNOX1P55347 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
PKNOX1P55347 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
PKNOX1P55347 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
PKNOX1P55347 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
PKNOX1P55347 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.61■□□□□ 0.25
PKNOX1P55347 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
PKNOX1P55347 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.61■□□□□ 0.25
PKNOX1P55347 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.61■□□□□ 0.25
PKNOX1P55347 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 AC068418.2-201ENST00000577309 3703 ntBASIC16.6■□□□□ 0.25
PKNOX1P55347 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 AL513523.2-202ENST00000427283 2040 ntBASIC16.6■□□□□ 0.25
PKNOX1P55347 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
PKNOX1P55347 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.6■□□□□ 0.25
PKNOX1P55347 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.6■□□□□ 0.25
PKNOX1P55347 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
PKNOX1P55347 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
PKNOX1P55347 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PKNOX1P55347 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PKNOX1P55347 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PKNOX1P55347 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.6■□□□□ 0.25
PKNOX1P55347 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.6■□□□□ 0.25
PKNOX1P55347 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
PKNOX1P55347 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.59■□□□□ 0.25
PKNOX1P55347 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.59■□□□□ 0.25
PKNOX1P55347 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.59■□□□□ 0.25
PKNOX1P55347 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 AC012615.1-201ENST00000565797 1299 ntBASIC16.59■□□□□ 0.25
PKNOX1P55347 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 MIR3180-1-201ENST00000580374 94 ntBASIC16.59■□□□□ 0.25
PKNOX1P55347 MIR3180-3-201ENST00000584616 94 ntBASIC16.59■□□□□ 0.25
PKNOX1P55347 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.59■□□□□ 0.25
PKNOX1P55347 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
PKNOX1P55347 AC073592.4-201ENST00000623827 446 ntBASIC16.59■□□□□ 0.25
PKNOX1P55347 AP000550.4-202ENST00000639755 178 ntBASIC16.59■□□□□ 0.25
PKNOX1P55347 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.59■□□□□ 0.25
PKNOX1P55347 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
PKNOX1P55347 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.59■□□□□ 0.25
PKNOX1P55347 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PKNOX1P55347 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms