Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC17.82■□□□□ 0.44
LIG3P49916 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 AC097374.2-201ENST00000618617 1306 ntBASIC17.82■□□□□ 0.44
LIG3P49916 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
LIG3P49916 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
LIG3P49916 FAAHP1-202ENST00000446499 1238 ntBASIC17.82■□□□□ 0.44
LIG3P49916 COX5A-204ENST00000567270 579 ntTSL 3 BASIC17.82■□□□□ 0.44
LIG3P49916 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.82■□□□□ 0.44
LIG3P49916 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.82■□□□□ 0.44
LIG3P49916 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.82■□□□□ 0.44
LIG3P49916 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
LIG3P49916 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.82■□□□□ 0.44
LIG3P49916 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.82■□□□□ 0.44
LIG3P49916 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
LIG3P49916 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.82■□□□□ 0.44
LIG3P49916 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 AC060834.1-201ENST00000443027 2032 ntBASIC17.81■□□□□ 0.44
LIG3P49916 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
LIG3P49916 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC17.81■□□□□ 0.44
LIG3P49916 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 INTS4P1-201ENST00000438455 1935 ntBASIC17.81■□□□□ 0.44
LIG3P49916 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
LIG3P49916 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.81■□□□□ 0.44
LIG3P49916 AC132008.2-207ENST00000454517 770 ntBASIC17.81■□□□□ 0.44
LIG3P49916 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.81■□□□□ 0.44
LIG3P49916 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
LIG3P49916 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC17.81■□□□□ 0.44
LIG3P49916 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC17.81■□□□□ 0.44
LIG3P49916 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
LIG3P49916 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC17.81■□□□□ 0.44
LIG3P49916 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.81■□□□□ 0.44
LIG3P49916 AC144831.1-201ENST00000573312 2656 ntBASIC17.81■□□□□ 0.44
LIG3P49916 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.81■□□□□ 0.44
LIG3P49916 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.81■□□□□ 0.44
LIG3P49916 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.81■□□□□ 0.44
LIG3P49916 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
LIG3P49916 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC17.8■□□□□ 0.44
LIG3P49916 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.8■□□□□ 0.44
LIG3P49916 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.8■□□□□ 0.44
LIG3P49916 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.8■□□□□ 0.44
LIG3P49916 AKR1C7P-201ENST00000305623 895 ntBASIC17.8■□□□□ 0.44
LIG3P49916 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 EMD-201ENST00000369835 966 ntTSL 3 BASIC17.8■□□□□ 0.44
LIG3P49916 AC007967.3-201ENST00000434308 558 ntBASIC17.8■□□□□ 0.44
LIG3P49916 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.8■□□□□ 0.44
LIG3P49916 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
LIG3P49916 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.8■□□□□ 0.44
LIG3P49916 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.8■□□□□ 0.44
LIG3P49916 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.8■□□□□ 0.44
LIG3P49916 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.8■□□□□ 0.44
LIG3P49916 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.8■□□□□ 0.44
LIG3P49916 REXO1L6P-202ENST00000619970 1078 ntBASIC17.8■□□□□ 0.44
LIG3P49916 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
LIG3P49916 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 AC100803.2-201ENST00000562459 1963 ntBASIC17.8■□□□□ 0.44
LIG3P49916 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.8■□□□□ 0.44
LIG3P49916 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms