Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 BX276092.7-203ENST00000637198 1536 ntBASIC19.43■□□□□ 0.7
CTCFP49711 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 FXNP2-201ENST00000411625 547 ntBASIC19.43■□□□□ 0.7
CTCFP49711 SLC25A24P2-201ENST00000415059 510 ntBASIC19.43■□□□□ 0.7
CTCFP49711 RNA5SP412-201ENST00000516234 123 ntBASIC19.43■□□□□ 0.7
CTCFP49711 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.43■□□□□ 0.7
CTCFP49711 AC079328.1-201ENST00000560358 952 ntBASIC19.43■□□□□ 0.7
CTCFP49711 CTBP2P3-201ENST00000585629 1255 ntBASIC19.43■□□□□ 0.7
CTCFP49711 WNT11-204ENST00000621122 789 ntTSL 5 BASIC19.43■□□□□ 0.7
CTCFP49711 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.43■□□□□ 0.7
CTCFP49711 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CTCFP49711 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.43■□□□□ 0.7
CTCFP49711 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CTCFP49711 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.43■□□□□ 0.7
CTCFP49711 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CTCFP49711 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CTCFP49711 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
CTCFP49711 AL390961.4-201ENST00000623958 2535 ntBASIC19.43■□□□□ 0.7
CTCFP49711 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC19.42■□□□□ 0.7
CTCFP49711 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CTCFP49711 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
CTCFP49711 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC19.42■□□□□ 0.7
CTCFP49711 NOC2LP1-202ENST00000452600 2235 ntBASIC19.42■□□□□ 0.7
CTCFP49711 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC19.42■□□□□ 0.7
CTCFP49711 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC19.42■□□□□ 0.7
CTCFP49711 MTND6P24-201ENST00000440466 518 ntBASIC19.42■□□□□ 0.7
CTCFP49711 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 ELK1P1-201ENST00000485699 580 ntBASIC19.42■□□□□ 0.7
CTCFP49711 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC19.42■□□□□ 0.7
CTCFP49711 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC19.42■□□□□ 0.7
CTCFP49711 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.42■□□□□ 0.7
CTCFP49711 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CTCFP49711 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.42■□□□□ 0.7
CTCFP49711 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CTCFP49711 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CTCFP49711 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.42■□□□□ 0.7
CTCFP49711 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CTCFP49711 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
CTCFP49711 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC19.41■□□□□ 0.7
CTCFP49711 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CTCFP49711 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.41■□□□□ 0.7
CTCFP49711 AC142381.1-201ENST00000426099 345 ntBASIC19.41■□□□□ 0.7
CTCFP49711 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC19.41■□□□□ 0.7
CTCFP49711 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.41■□□□□ 0.7
CTCFP49711 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC19.41■□□□□ 0.7
CTCFP49711 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.41■□□□□ 0.7
CTCFP49711 AC002558.1-201ENST00000488906 803 ntBASIC19.41■□□□□ 0.7
CTCFP49711 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC19.41■□□□□ 0.7
CTCFP49711 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.41■□□□□ 0.7
CTCFP49711 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC19.41■□□□□ 0.7
CTCFP49711 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.41■□□□□ 0.7
CTCFP49711 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC19.41■□□□□ 0.7
CTCFP49711 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.41■□□□□ 0.7
CTCFP49711 AC004790.1-201ENST00000612686 536 ntBASIC19.41■□□□□ 0.7
CTCFP49711 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CTCFP49711 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CTCFP49711 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.4■□□□□ 0.7
CTCFP49711 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CTCFP49711 AL353705.2-201ENST00000428243 662 ntBASIC19.4■□□□□ 0.7
CTCFP49711 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC19.4■□□□□ 0.7
CTCFP49711 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC19.4■□□□□ 0.7
CTCFP49711 CTBP2P5-201ENST00000454986 1264 ntBASIC19.4■□□□□ 0.7
CTCFP49711 AL138918.1-201ENST00000568306 659 ntBASIC19.4■□□□□ 0.7
CTCFP49711 BTNL10-201ENST00000595971 695 ntBASIC19.4■□□□□ 0.7
CTCFP49711 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.4■□□□□ 0.7
CTCFP49711 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms