Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RAD18-204ENST00000418463 563 ntTSL 4 BASIC21.88■■□□□ 1.09
COL18A1P39060 RAD18-205ENST00000421052 582 ntTSL 3 BASIC21.88■■□□□ 1.09
COL18A1P39060 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC21.88■■□□□ 1.09
COL18A1P39060 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC21.88■■□□□ 1.09
COL18A1P39060 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC21.88■■□□□ 1.09
COL18A1P39060 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC21.88■■□□□ 1.09
COL18A1P39060 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
COL18A1P39060 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
COL18A1P39060 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.88■■□□□ 1.09
COL18A1P39060 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
COL18A1P39060 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC21.87■■□□□ 1.09
COL18A1P39060 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
COL18A1P39060 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 SERBP1P3-201ENST00000459980 809 ntBASIC21.87■■□□□ 1.09
COL18A1P39060 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC21.87■■□□□ 1.09
COL18A1P39060 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.87■■□□□ 1.09
COL18A1P39060 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.87■■□□□ 1.09
COL18A1P39060 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC21.87■■□□□ 1.09
COL18A1P39060 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC21.87■■□□□ 1.09
COL18A1P39060 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC21.87■■□□□ 1.09
COL18A1P39060 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
COL18A1P39060 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 RN7SL752P-201ENST00000463779 287 ntBASIC21.87■■□□□ 1.09
COL18A1P39060 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
COL18A1P39060 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC21.87■■□□□ 1.09
COL18A1P39060 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC21.87■■□□□ 1.09
COL18A1P39060 RAB43P1-201ENST00000561790 589 ntBASIC21.87■■□□□ 1.09
COL18A1P39060 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC21.87■■□□□ 1.09
COL18A1P39060 WFDC1-204ENST00000613603 549 ntBASIC21.87■■□□□ 1.09
COL18A1P39060 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC21.87■■□□□ 1.09
COL18A1P39060 AL139011.1-202ENST00000642063 584 ntBASIC21.87■■□□□ 1.09
COL18A1P39060 CROCCP2-202ENST00000412962 2773 ntBASIC21.86■■□□□ 1.09
COL18A1P39060 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
COL18A1P39060 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 GGT4P-201ENST00000623672 1708 ntBASIC21.86■■□□□ 1.09
COL18A1P39060 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
COL18A1P39060 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC21.86■■□□□ 1.09
COL18A1P39060 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
COL18A1P39060 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
COL18A1P39060 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
COL18A1P39060 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC21.86■■□□□ 1.09
COL18A1P39060 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC21.86■■□□□ 1.09
COL18A1P39060 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC21.86■■□□□ 1.09
COL18A1P39060 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC21.86■■□□□ 1.09
COL18A1P39060 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 AC123567.1-201ENST00000548294 1261 ntBASIC21.86■■□□□ 1.09
COL18A1P39060 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC21.86■■□□□ 1.09
COL18A1P39060 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
COL18A1P39060 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC21.86■■□□□ 1.09
COL18A1P39060 AL589702.1-201ENST00000641229 1509 ntBASIC21.85■■□□□ 1.09
COL18A1P39060 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC21.85■■□□□ 1.09
COL18A1P39060 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
COL18A1P39060 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC21.85■■□□□ 1.09
COL18A1P39060 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC21.85■■□□□ 1.09
COL18A1P39060 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC21.85■■□□□ 1.09
COL18A1P39060 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC21.85■■□□□ 1.09
COL18A1P39060 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC21.85■■□□□ 1.09
COL18A1P39060 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
COL18A1P39060 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC21.84■■□□□ 1.09
COL18A1P39060 AC022210.1-201ENST00000449856 793 ntBASIC21.84■■□□□ 1.09
COL18A1P39060 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
COL18A1P39060 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC21.84■■□□□ 1.09
COL18A1P39060 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC21.84■■□□□ 1.09
COL18A1P39060 ORC6-206ENST00000568364 888 ntTSL 5 BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms