Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.37■□□□□ 0.37
HMGA1P17096 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGA1P17096 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGA1P17096 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.37■□□□□ 0.37
HMGA1P17096 AQP6-203ENST00000551733 849 ntTSL 3 BASIC17.37■□□□□ 0.37
HMGA1P17096 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.37■□□□□ 0.37
HMGA1P17096 MIR6080-201ENST00000617359 66 ntBASIC17.37■□□□□ 0.37
HMGA1P17096 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGA1P17096 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGA1P17096 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.37■□□□□ 0.37
HMGA1P17096 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
HMGA1P17096 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGA1P17096 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGA1P17096 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 AP3S2-216ENST00000617003 1561 ntBASIC17.36■□□□□ 0.37
HMGA1P17096 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGA1P17096 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.36■□□□□ 0.37
HMGA1P17096 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
HMGA1P17096 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGA1P17096 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGA1P17096 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGA1P17096 PRYP6-201ENST00000514804 343 ntBASIC17.36■□□□□ 0.37
HMGA1P17096 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGA1P17096 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.36■□□□□ 0.37
HMGA1P17096 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGA1P17096 AL139011.1-202ENST00000642063 584 ntBASIC17.36■□□□□ 0.37
HMGA1P17096 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
HMGA1P17096 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
HMGA1P17096 FO538757.1-201ENST00000623083 1397 ntBASIC17.36■□□□□ 0.37
HMGA1P17096 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.36■□□□□ 0.37
HMGA1P17096 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
HMGA1P17096 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGA1P17096 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.36■□□□□ 0.37
HMGA1P17096 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.36■□□□□ 0.37
HMGA1P17096 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC17.36■□□□□ 0.37
HMGA1P17096 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGA1P17096 AC073439.1-201ENST00000624121 1774 ntBASIC17.35■□□□□ 0.37
HMGA1P17096 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
HMGA1P17096 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGA1P17096 PCDHB18P-201ENST00000524813 2368 ntBASIC17.35■□□□□ 0.37
HMGA1P17096 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.35■□□□□ 0.37
HMGA1P17096 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.35■□□□□ 0.37
HMGA1P17096 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC17.35■□□□□ 0.37
HMGA1P17096 AC093214.1-201ENST00000511688 1107 ntBASIC17.35■□□□□ 0.37
HMGA1P17096 RARRES2P9-201ENST00000565168 469 ntBASIC17.35■□□□□ 0.37
HMGA1P17096 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.35■□□□□ 0.37
HMGA1P17096 MIR4453-201ENST00000584019 89 ntBASIC17.35■□□□□ 0.37
HMGA1P17096 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.35■□□□□ 0.37
HMGA1P17096 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGA1P17096 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.35■□□□□ 0.37
HMGA1P17096 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
HMGA1P17096 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.35■□□□□ 0.37
HMGA1P17096 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGA1P17096 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HMGA1P17096 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms