Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.5■□□□□ 0.23
PCNAP12004 FRMD8P1-201ENST00000440433 1524 ntBASIC16.5■□□□□ 0.23
PCNAP12004 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
PCNAP12004 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.5■□□□□ 0.23
PCNAP12004 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 AL391005.1-201ENST00000623953 2435 ntBASIC16.49■□□□□ 0.23
PCNAP12004 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 IPPK-202ENST00000375522 882 ntTSL 3 BASIC16.49■□□□□ 0.23
PCNAP12004 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 MST1L-201ENST00000442552 2185 ntBASIC16.49■□□□□ 0.23
PCNAP12004 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.49■□□□□ 0.23
PCNAP12004 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCNAP12004 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.49■□□□□ 0.23
PCNAP12004 IFNL4P1-201ENST00000607083 540 ntBASIC16.49■□□□□ 0.23
PCNAP12004 REXO1L6P-202ENST00000619970 1078 ntBASIC16.49■□□□□ 0.23
PCNAP12004 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
PCNAP12004 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
PCNAP12004 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
PCNAP12004 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCNAP12004 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 NCF1C-201ENST00000438382 1427 ntBASIC16.48■□□□□ 0.23
PCNAP12004 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
PCNAP12004 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.48■□□□□ 0.23
PCNAP12004 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.48■□□□□ 0.23
PCNAP12004 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.48■□□□□ 0.23
PCNAP12004 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 SAPCD2P3-201ENST00000455031 850 ntBASIC16.48■□□□□ 0.23
PCNAP12004 FGFR3P6-201ENST00000457012 610 ntBASIC16.48■□□□□ 0.23
PCNAP12004 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.48■□□□□ 0.23
PCNAP12004 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PCNAP12004 SART3-203ENST00000546611 1184 ntBASIC16.48■□□□□ 0.23
PCNAP12004 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PCNAP12004 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
PCNAP12004 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
PCNAP12004 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.48■□□□□ 0.23
PCNAP12004 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
PCNAP12004 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
PCNAP12004 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCNAP12004 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCNAP12004 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCNAP12004 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.47■□□□□ 0.23
PCNAP12004 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
PCNAP12004 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
PCNAP12004 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms