Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
HMGB1P09429 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGB1P09429 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGB1P09429 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGB1P09429 AC087641.1-201ENST00000557561 1021 ntBASIC19.89■□□□□ 0.77
HMGB1P09429 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGB1P09429 SNX33P1-201ENST00000592116 1762 ntBASIC19.89■□□□□ 0.77
HMGB1P09429 AL049840.3-201ENST00000602669 611 ntBASIC19.89■□□□□ 0.77
HMGB1P09429 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGB1P09429 AC004790.2-201ENST00000623588 572 ntBASIC19.89■□□□□ 0.77
HMGB1P09429 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGB1P09429 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGB1P09429 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
HMGB1P09429 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
HMGB1P09429 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
HMGB1P09429 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.88■□□□□ 0.77
HMGB1P09429 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
HMGB1P09429 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGB1P09429 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGB1P09429 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGB1P09429 OR7E47P-204ENST00000575924 449 ntBASIC19.88■□□□□ 0.77
HMGB1P09429 SLC25A6P4-201ENST00000586535 553 ntBASIC19.88■□□□□ 0.77
HMGB1P09429 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.88■□□□□ 0.77
HMGB1P09429 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HMGB1P09429 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
HMGB1P09429 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 AC116407.3-201ENST00000623905 1129 ntBASIC19.88■□□□□ 0.77
HMGB1P09429 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGB1P09429 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
HMGB1P09429 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGB1P09429 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGB1P09429 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC19.87■□□□□ 0.77
HMGB1P09429 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.87■□□□□ 0.77
HMGB1P09429 CYP51A1P2-201ENST00000419457 1499 ntBASIC19.87■□□□□ 0.77
HMGB1P09429 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
HMGB1P09429 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGB1P09429 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGB1P09429 AC098831.1-202ENST00000438821 336 ntBASIC19.87■□□□□ 0.77
HMGB1P09429 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
HMGB1P09429 CYP2A7P1-201ENST00000595391 815 ntBASIC19.87■□□□□ 0.77
HMGB1P09429 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGB1P09429 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGB1P09429 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
HMGB1P09429 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
HMGB1P09429 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
HMGB1P09429 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGB1P09429 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGB1P09429 UBALD1-205ENST00000590891 2641 ntBASIC19.86■□□□□ 0.77
HMGB1P09429 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGB1P09429 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGB1P09429 FAM185BP-201ENST00000443595 716 ntBASIC19.86■□□□□ 0.77
HMGB1P09429 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.86■□□□□ 0.77
HMGB1P09429 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGB1P09429 AC108751.1-201ENST00000490852 363 ntBASIC19.86■□□□□ 0.77
HMGB1P09429 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGB1P09429 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGB1P09429 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
HMGB1P09429 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC19.86■□□□□ 0.77
HMGB1P09429 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.86■□□□□ 0.77
HMGB1P09429 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
HMGB1P09429 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGB1P09429 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.86■□□□□ 0.77
HMGB1P09429 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
HMGB1P09429 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGB1P09429 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
HMGB1P09429 PC-214ENST00000628663 1470 ntTSL 5 BASIC19.86■□□□□ 0.77
HMGB1P09429 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.85■□□□□ 0.77
HMGB1P09429 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HMGB1P09429 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms