Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VIMP08670 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VIMP08670 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VIMP08670 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VIMP08670 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.02■□□□□ 0.31
VIMP08670 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.02■□□□□ 0.31
VIMP08670 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VIMP08670 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC17.01■□□□□ 0.31
VIMP08670 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
VIMP08670 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.01■□□□□ 0.31
VIMP08670 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 HLA-DQB2-231ENST00000435145 2026 ntBASIC17.01■□□□□ 0.31
VIMP08670 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 AC096633.1-201ENST00000422446 749 ntBASIC17.01■□□□□ 0.31
VIMP08670 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.01■□□□□ 0.31
VIMP08670 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.01■□□□□ 0.31
VIMP08670 AC010491.1-201ENST00000563101 2797 ntBASIC17.01■□□□□ 0.31
VIMP08670 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.01■□□□□ 0.31
VIMP08670 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VIMP08670 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC17■□□□□ 0.31
VIMP08670 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17■□□□□ 0.31
VIMP08670 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VIMP08670 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VIMP08670 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
VIMP08670 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17■□□□□ 0.31
VIMP08670 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17■□□□□ 0.31
VIMP08670 COX5BP2-201ENST00000392354 334 ntBASIC17■□□□□ 0.31
VIMP08670 AC073347.1-201ENST00000421633 2643 ntBASIC17■□□□□ 0.31
VIMP08670 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17■□□□□ 0.31
VIMP08670 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VIMP08670 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17■□□□□ 0.31
VIMP08670 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17■□□□□ 0.31
VIMP08670 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC17■□□□□ 0.31
VIMP08670 AL596087.1-201ENST00000400979 1969 ntBASIC17■□□□□ 0.31
VIMP08670 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
VIMP08670 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VIMP08670 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17■□□□□ 0.31
VIMP08670 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
VIMP08670 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.99■□□□□ 0.31
VIMP08670 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
VIMP08670 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 AC012618.2-201ENST00000428058 849 ntBASIC16.99■□□□□ 0.31
VIMP08670 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.99■□□□□ 0.31
VIMP08670 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC16.99■□□□□ 0.31
VIMP08670 AC109462.3-201ENST00000573934 613 ntBASIC16.99■□□□□ 0.31
VIMP08670 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VIMP08670 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms