Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC20.99■□□□□ 0.95
CACNA1FO60840 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CACNA1FO60840 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.99■□□□□ 0.95
CACNA1FO60840 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.99■□□□□ 0.95
CACNA1FO60840 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC20.99■□□□□ 0.95
CACNA1FO60840 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.99■□□□□ 0.95
CACNA1FO60840 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 SATB1-217ENST00000493952 626 ntTSL 3 BASIC20.99■□□□□ 0.95
CACNA1FO60840 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.99■□□□□ 0.95
CACNA1FO60840 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.99■□□□□ 0.95
CACNA1FO60840 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CACNA1FO60840 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CACNA1FO60840 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.98■□□□□ 0.95
CACNA1FO60840 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CACNA1FO60840 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.98■□□□□ 0.95
CACNA1FO60840 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 AC024267.1-201ENST00000582320 895 ntBASIC20.98■□□□□ 0.95
CACNA1FO60840 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
CACNA1FO60840 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CACNA1FO60840 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CACNA1FO60840 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.98■□□□□ 0.95
CACNA1FO60840 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CACNA1FO60840 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CACNA1FO60840 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
CACNA1FO60840 UBALD1-205ENST00000590891 2641 ntBASIC20.98■□□□□ 0.95
CACNA1FO60840 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
CACNA1FO60840 ME2P1-201ENST00000426028 1970 ntBASIC20.98■□□□□ 0.95
CACNA1FO60840 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.97■□□□□ 0.95
CACNA1FO60840 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.97■□□□□ 0.95
CACNA1FO60840 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC20.97■□□□□ 0.95
CACNA1FO60840 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CACNA1FO60840 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC20.97■□□□□ 0.95
CACNA1FO60840 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.97■□□□□ 0.95
CACNA1FO60840 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC20.97■□□□□ 0.95
CACNA1FO60840 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC20.97■□□□□ 0.95
CACNA1FO60840 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC20.97■□□□□ 0.95
CACNA1FO60840 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC20.97■□□□□ 0.95
CACNA1FO60840 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
CACNA1FO60840 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC20.97■□□□□ 0.95
CACNA1FO60840 AC015911.4-201ENST00000588022 1070 ntBASIC20.97■□□□□ 0.95
CACNA1FO60840 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.97■□□□□ 0.95
CACNA1FO60840 AC004835.2-201ENST00000603762 682 ntBASIC20.97■□□□□ 0.95
CACNA1FO60840 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.97■□□□□ 0.95
CACNA1FO60840 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CACNA1FO60840 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC20.96■□□□□ 0.95
CACNA1FO60840 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC20.96■□□□□ 0.95
CACNA1FO60840 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CACNA1FO60840 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.96■□□□□ 0.95
CACNA1FO60840 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC20.96■□□□□ 0.95
CACNA1FO60840 AC067863.1-201ENST00000494933 530 ntBASIC20.96■□□□□ 0.95
CACNA1FO60840 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CACNA1FO60840 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 AC106886.4-201ENST00000623557 2502 ntBASIC20.96■□□□□ 0.95
CACNA1FO60840 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.96■□□□□ 0.95
CACNA1FO60840 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC20.96■□□□□ 0.95
CACNA1FO60840 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.96■□□□□ 0.95
CACNA1FO60840 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CACNA1FO60840 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC20.96■□□□□ 0.95
CACNA1FO60840 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CACNA1FO60840 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms