Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.21■□□□□ 0.19
PIF1Q9H611 GUSBP12-201ENST00000513727 720 ntBASIC16.21■□□□□ 0.19
PIF1Q9H611 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
PIF1Q9H611 AC124864.1-201ENST00000623408 392 ntBASIC16.21■□□□□ 0.19
PIF1Q9H611 WDR6-223ENST00000627177 207 ntTSL 2 BASIC16.21■□□□□ 0.19
PIF1Q9H611 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.21■□□□□ 0.19
PIF1Q9H611 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.21■□□□□ 0.19
PIF1Q9H611 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PIF1Q9H611 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
PIF1Q9H611 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
PIF1Q9H611 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
PIF1Q9H611 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.21■□□□□ 0.19
PIF1Q9H611 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
PIF1Q9H611 AC063926.3-201ENST00000624734 5658 ntBASIC16.21■□□□□ 0.19
PIF1Q9H611 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
PIF1Q9H611 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
PIF1Q9H611 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
PIF1Q9H611 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.18
PIF1Q9H611 AL596257.1-201ENST00000641463 2694 ntBASIC16.21■□□□□ 0.18
PIF1Q9H611 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.21■□□□□ 0.18
PIF1Q9H611 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.21■□□□□ 0.18
PIF1Q9H611 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.2■□□□□ 0.18
PIF1Q9H611 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PIF1Q9H611 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 FUT8-AS1-201ENST00000621019 1521 ntBASIC16.2■□□□□ 0.18
PIF1Q9H611 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
PIF1Q9H611 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
PIF1Q9H611 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.2■□□□□ 0.18
PIF1Q9H611 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
PIF1Q9H611 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.2■□□□□ 0.18
PIF1Q9H611 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 STK25P1-201ENST00000585406 838 ntBASIC16.2■□□□□ 0.18
PIF1Q9H611 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.2■□□□□ 0.18
PIF1Q9H611 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.2■□□□□ 0.18
PIF1Q9H611 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
PIF1Q9H611 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
PIF1Q9H611 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.2■□□□□ 0.18
PIF1Q9H611 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
PIF1Q9H611 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.19■□□□□ 0.18
PIF1Q9H611 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
PIF1Q9H611 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 GPR89P-201ENST00000407924 1495 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.19■□□□□ 0.18
PIF1Q9H611 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 AL031133.1-201ENST00000406807 723 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC16.19■□□□□ 0.18
PIF1Q9H611 SPDYE13P-201ENST00000445314 798 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.19■□□□□ 0.18
PIF1Q9H611 STK19B-204ENST00000512515 211 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.19■□□□□ 0.18
PIF1Q9H611 RMI2-205ENST00000576027 818 ntTSL 2 BASIC16.19■□□□□ 0.18
PIF1Q9H611 AC005336.2-201ENST00000593183 939 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.19■□□□□ 0.18
PIF1Q9H611 AC068418.2-201ENST00000577309 3703 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 AL513523.2-202ENST00000427283 2040 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.19■□□□□ 0.18
PIF1Q9H611 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 AC005052.1-201ENST00000625181 2492 ntBASIC16.19■□□□□ 0.18
PIF1Q9H611 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
PIF1Q9H611 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
PIF1Q9H611 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
PIF1Q9H611 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
PIF1Q9H611 BAALC-202ENST00000306391 243 ntTSL 5 BASIC16.18■□□□□ 0.18
PIF1Q9H611 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
PIF1Q9H611 BAALC-204ENST00000330955 222 ntTSL 5 BASIC16.18■□□□□ 0.18
PIF1Q9H611 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.18■□□□□ 0.18
PIF1Q9H611 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
PIF1Q9H611 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms