Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC28BQ9BUN5 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AL592071.1-201ENST00000611956 408 ntBASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AC124864.1-201ENST00000623408 392 ntBASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AL021920.2-201ENST00000624828 1351 ntBASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC28BQ9BUN5 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AC087499.1-201ENST00000418141 1075 ntBASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 TSPY5P-201ENST00000426936 936 ntBASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 LY6E-213ENST00000522528 606 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AC009533.2-201ENST00000543664 586 ntBASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AC011840.4-201ENST00000578471 627 ntBASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 DFFB-212ENST00000625756 649 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 TMEM191A-211ENST00000637163 1067 ntBASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC28BQ9BUN5 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.46■□□□□ 0.22
CCDC28BQ9BUN5 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.46■□□□□ 0.22
CCDC28BQ9BUN5 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC28BQ9BUN5 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC28BQ9BUN5 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC28BQ9BUN5 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC28BQ9BUN5 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms