Protein–RNA interactions for Protein: Q9BT76

UPK3B, Uroplakin-3b, humanhuman

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BQ9BT76 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
UPK3BQ9BT76 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
UPK3BQ9BT76 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 F11R-206ENST00000621309 4770 ntTSL 5 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 HNRNPA1P28-201ENST00000424481 961 ntBASIC11.81□□□□□ -0.52
UPK3BQ9BT76 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 AC108073.2-201ENST00000464002 357 ntBASIC11.81□□□□□ -0.52
UPK3BQ9BT76 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CIPC-205ENST00000555437 566 ntTSL 3 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 AC040169.1-201ENST00000565382 521 ntBASIC11.81□□□□□ -0.52
UPK3BQ9BT76 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 AC010654.1-201ENST00000615722 808 ntBASIC11.81□□□□□ -0.52
UPK3BQ9BT76 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 AL590787.1-201ENST00000568856 1315 ntBASIC11.81□□□□□ -0.52
UPK3BQ9BT76 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC11.81□□□□□ -0.52
UPK3BQ9BT76 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 LYSMD4-203ENST00000378904 2122 ntBASIC11.8□□□□□ -0.52
UPK3BQ9BT76 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 CD276-201ENST00000318424 2738 ntTSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 FABP5-202ENST00000396359 986 ntTSL 5 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 MRPL20P1-201ENST00000400819 433 ntBASIC11.8□□□□□ -0.52
UPK3BQ9BT76 PTCHD3P3-201ENST00000403073 906 ntBASIC11.8□□□□□ -0.52
UPK3BQ9BT76 CRYGEP-201ENST00000412192 528 ntBASIC11.8□□□□□ -0.52
UPK3BQ9BT76 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 POLD2P1-201ENST00000511220 997 ntBASIC11.8□□□□□ -0.52
UPK3BQ9BT76 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 RIN3-211ENST00000557762 517 ntTSL 3 BASIC11.8□□□□□ -0.52
UPK3BQ9BT76 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC11.8□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms