Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 AL513480.1-201ENST00000451731 511 ntBASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 AC005225.4-201ENST00000557330 545 ntBASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 AC087641.1-201ENST00000557561 1021 ntBASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
NKX2-3Q8TAU0 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 AC004461.1-201ENST00000412461 403 ntBASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 AC105339.1-204ENST00000636249 355 ntBASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 AC007064.4-201ENST00000637740 555 ntBASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
NKX2-3Q8TAU0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 AC099398.1-201ENST00000567919 2776 ntBASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 AC023141.5-201ENST00000458585 616 ntBASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 AC015911.4-201ENST00000588022 1070 ntBASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 LINC00628-201ENST00000628516 1289 ntBASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
NKX2-3Q8TAU0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 INGX-202ENST00000489074 768 ntBASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.86■□□□□ 0.77
NKX2-3Q8TAU0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms