Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC21■□□□□ 0.95
RC3H1Q5TC82 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC21■□□□□ 0.95
RC3H1Q5TC82 SPDYE17-201ENST00000412399 783 ntBASIC21■□□□□ 0.95
RC3H1Q5TC82 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC21■□□□□ 0.95
RC3H1Q5TC82 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 SPDYE18-201ENST00000510091 1050 ntBASIC21■□□□□ 0.95
RC3H1Q5TC82 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC21■□□□□ 0.95
RC3H1Q5TC82 RAB35-202ENST00000534951 939 ntTSL 2 BASIC21■□□□□ 0.95
RC3H1Q5TC82 KRT17P8-201ENST00000540749 863 ntBASIC21■□□□□ 0.95
RC3H1Q5TC82 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC21■□□□□ 0.95
RC3H1Q5TC82 MIR6805-201ENST00000615055 62 ntBASIC21■□□□□ 0.95
RC3H1Q5TC82 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC21■□□□□ 0.95
RC3H1Q5TC82 KRT8P39-201ENST00000396270 1433 ntBASIC21■□□□□ 0.95
RC3H1Q5TC82 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC21■□□□□ 0.95
RC3H1Q5TC82 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC21■□□□□ 0.95
RC3H1Q5TC82 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21■□□□□ 0.95
RC3H1Q5TC82 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RC3H1Q5TC82 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 GLI4-203ENST00000517468 963 ntTSL 5 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 SRD5A3P1-201ENST00000603021 949 ntBASIC20.99■□□□□ 0.95
RC3H1Q5TC82 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
RC3H1Q5TC82 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 KRT8P12-202ENST00000472924 1397 ntBASIC20.98■□□□□ 0.95
RC3H1Q5TC82 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 SNX33P1-201ENST00000592116 1762 ntBASIC20.98■□□□□ 0.95
RC3H1Q5TC82 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 DPM2-202ENST00000373110 738 ntTSL 2 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 SERBP1P3-201ENST00000459980 809 ntBASIC20.98■□□□□ 0.95
RC3H1Q5TC82 AC055876.2-201ENST00000531834 546 ntBASIC20.98■□□□□ 0.95
RC3H1Q5TC82 APOC4-201ENST00000591600 348 ntTSL 3 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 Six3os1_5.1-201ENST00000611000 271 ntBASIC20.98■□□□□ 0.95
RC3H1Q5TC82 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 AC135050.7-201ENST00000624508 2218 ntBASIC20.98■□□□□ 0.95
RC3H1Q5TC82 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
RC3H1Q5TC82 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 VMO1-203ENST00000416307 712 ntTSL 2 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 NAA38-207ENST00000576861 556 ntTSL 3 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.97■□□□□ 0.95
RC3H1Q5TC82 AC099568.2-201ENST00000609194 695 ntBASIC20.97■□□□□ 0.95
RC3H1Q5TC82 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.97■□□□□ 0.95
RC3H1Q5TC82 AL033527.5-202ENST00000641632 1098 ntBASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms