Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 AC027307.2-201ENST00000591252 911 ntBASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 AL136317.3-201ENST00000618497 906 ntBASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 SLC9A3P2-201ENST00000447821 2021 ntBASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 AC008677.1-201ENST00000519230 1561 ntBASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 TUBB3P1-201ENST00000405796 1332 ntBASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RNFT1Q5M7Z0 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AC067863.1-201ENST00000494933 530 ntBASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AP000842.3-202ENST00000569238 1080 ntBASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AC008267.7-201ENST00000624570 1194 ntBASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RNFT1Q5M7Z0 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 MIR346-201ENST00000362234 95 ntBASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNFT1Q5M7Z0 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms