Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC11.98□□□□□ -0.49
PRKDCP78527 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC11.98□□□□□ -0.49
PRKDCP78527 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC11.98□□□□□ -0.49
PRKDCP78527 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC11.98□□□□□ -0.49
PRKDCP78527 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC11.98□□□□□ -0.49
PRKDCP78527 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC11.98□□□□□ -0.49
PRKDCP78527 ABBA01031660.1-201ENST00000635219 756 ntBASIC11.98□□□□□ -0.49
PRKDCP78527 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
PRKDCP78527 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
PRKDCP78527 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC11.98□□□□□ -0.49
PRKDCP78527 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
PRKDCP78527 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC11.97□□□□□ -0.49
PRKDCP78527 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 SPDYE17-201ENST00000412399 783 ntBASIC11.97□□□□□ -0.49
PRKDCP78527 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC11.97□□□□□ -0.49
PRKDCP78527 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC11.97□□□□□ -0.49
PRKDCP78527 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 KRT8P22-201ENST00000562317 1415 ntBASIC11.97□□□□□ -0.49
PRKDCP78527 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
PRKDCP78527 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC11.97□□□□□ -0.49
PRKDCP78527 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC11.97□□□□□ -0.49
PRKDCP78527 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC11.97□□□□□ -0.49
PRKDCP78527 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
PRKDCP78527 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
PRKDCP78527 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC11.97□□□□□ -0.49
PRKDCP78527 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC11.97□□□□□ -0.49
PRKDCP78527 AL022328.3-201ENST00000607943 679 ntBASIC11.97□□□□□ -0.49
PRKDCP78527 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC11.97□□□□□ -0.49
PRKDCP78527 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
PRKDCP78527 ZBTB12BP-201ENST00000314232 1122 ntBASIC11.96□□□□□ -0.49
PRKDCP78527 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
PRKDCP78527 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC11.96□□□□□ -0.49
PRKDCP78527 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
PRKDCP78527 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
PRKDCP78527 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC11.96□□□□□ -0.49
PRKDCP78527 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
PRKDCP78527 AC018735.1-201ENST00000437208 1502 ntBASIC11.96□□□□□ -0.49
PRKDCP78527 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC11.96□□□□□ -0.49
PRKDCP78527 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC11.96□□□□□ -0.49
PRKDCP78527 RN7SL555P-201ENST00000584742 339 ntBASIC11.96□□□□□ -0.49
PRKDCP78527 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC11.96□□□□□ -0.49
PRKDCP78527 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC11.96□□□□□ -0.49
PRKDCP78527 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC11.96□□□□□ -0.49
PRKDCP78527 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC11.96□□□□□ -0.49
PRKDCP78527 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC11.96□□□□□ -0.49
PRKDCP78527 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
PRKDCP78527 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
PRKDCP78527 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.5
PRKDCP78527 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
PRKDCP78527 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC11.96□□□□□ -0.5
PRKDCP78527 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.5
PRKDCP78527 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC11.96□□□□□ -0.5
PRKDCP78527 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
PRKDCP78527 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC11.96□□□□□ -0.5
PRKDCP78527 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC11.96□□□□□ -0.5
PRKDCP78527 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.5
PRKDCP78527 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms