Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.85■□□□□ 0.45
LIG3P49916 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.85■□□□□ 0.45
LIG3P49916 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC17.85■□□□□ 0.45
LIG3P49916 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.85■□□□□ 0.45
LIG3P49916 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 KRT8P47-201ENST00000604727 1398 ntBASIC17.85■□□□□ 0.45
LIG3P49916 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.85■□□□□ 0.45
LIG3P49916 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LIG3P49916 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LIG3P49916 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LIG3P49916 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIG3P49916 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
LIG3P49916 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC17.84■□□□□ 0.45
LIG3P49916 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LIG3P49916 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.84■□□□□ 0.45
LIG3P49916 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.84■□□□□ 0.45
LIG3P49916 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 AC024909.3-201ENST00000611513 2257 ntBASIC17.84■□□□□ 0.45
LIG3P49916 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.84■□□□□ 0.45
LIG3P49916 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
LIG3P49916 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LIG3P49916 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC17.84■□□□□ 0.45
LIG3P49916 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIG3P49916 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.83■□□□□ 0.45
LIG3P49916 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
LIG3P49916 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC17.83■□□□□ 0.45
LIG3P49916 CASK-202ENST00000378158 3848 ntTSL 5 BASIC17.83■□□□□ 0.45
LIG3P49916 KRT18P55-202ENST00000578578 1546 ntBASIC17.83■□□□□ 0.45
LIG3P49916 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.83■□□□□ 0.45
LIG3P49916 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIG3P49916 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.83■□□□□ 0.45
LIG3P49916 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.45
LIG3P49916 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIG3P49916 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LIG3P49916 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIG3P49916 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.45
LIG3P49916 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
LIG3P49916 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LIG3P49916 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.83■□□□□ 0.44
LIG3P49916 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.83■□□□□ 0.44
LIG3P49916 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LIG3P49916 AC011467.2-201ENST00000598425 242 ntBASIC17.83■□□□□ 0.44
LIG3P49916 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.83■□□□□ 0.44
LIG3P49916 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
LIG3P49916 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.83■□□□□ 0.44
LIG3P49916 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
LIG3P49916 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.82■□□□□ 0.44
LIG3P49916 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.82■□□□□ 0.44
LIG3P49916 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.82■□□□□ 0.44
LIG3P49916 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.82■□□□□ 0.44
LIG3P49916 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LIG3P49916 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms