Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.35■□□□□ 0.21
CLDN9O95484 AC006277.1-201ENST00000624348 1610 ntBASIC16.35■□□□□ 0.21
CLDN9O95484 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 PTCHD3P3-201ENST00000403073 906 ntBASIC16.35■□□□□ 0.21
CLDN9O95484 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.35■□□□□ 0.21
CLDN9O95484 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.35■□□□□ 0.21
CLDN9O95484 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 AC025062.2-201ENST00000605477 670 ntBASIC16.35■□□□□ 0.21
CLDN9O95484 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 AF228730.7-201ENST00000641842 219 ntBASIC16.35■□□□□ 0.21
CLDN9O95484 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.35■□□□□ 0.21
CLDN9O95484 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.35■□□□□ 0.21
CLDN9O95484 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CLDN9O95484 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CLDN9O95484 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.34■□□□□ 0.21
CLDN9O95484 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.34■□□□□ 0.21
CLDN9O95484 AC006538.1-201ENST00000567905 1585 ntBASIC16.34■□□□□ 0.21
CLDN9O95484 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.34■□□□□ 0.21
CLDN9O95484 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.34■□□□□ 0.21
CLDN9O95484 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC16.34■□□□□ 0.21
CLDN9O95484 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 LAGE3P1-201ENST00000425356 484 ntBASIC16.34■□□□□ 0.21
CLDN9O95484 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.34■□□□□ 0.21
CLDN9O95484 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
CLDN9O95484 AC006557.2-201ENST00000592985 1240 ntBASIC16.34■□□□□ 0.21
CLDN9O95484 CLEC4GP1-201ENST00000596555 870 ntBASIC16.34■□□□□ 0.21
CLDN9O95484 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC16.34■□□□□ 0.21
CLDN9O95484 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CLDN9O95484 AC012313.10-201ENST00000623509 926 ntBASIC16.34■□□□□ 0.21
CLDN9O95484 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
CLDN9O95484 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.34■□□□□ 0.21
CLDN9O95484 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.34■□□□□ 0.21
CLDN9O95484 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 TNRC18P3-201ENST00000441896 2691 ntBASIC16.34■□□□□ 0.21
CLDN9O95484 AC079328.2-201ENST00000561241 3354 ntBASIC16.34■□□□□ 0.21
CLDN9O95484 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CLDN9O95484 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.34■□□□□ 0.21
CLDN9O95484 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.34■□□□□ 0.21
CLDN9O95484 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.34■□□□□ 0.21
CLDN9O95484 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.34■□□□□ 0.21
CLDN9O95484 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CLDN9O95484 PI4KAP1-204ENST00000612579 1703 ntBASIC16.33■□□□□ 0.21
CLDN9O95484 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CLDN9O95484 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC16.33■□□□□ 0.21
CLDN9O95484 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CLDN9O95484 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
CLDN9O95484 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.33■□□□□ 0.2
CLDN9O95484 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CLDN9O95484 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC16.33■□□□□ 0.2
CLDN9O95484 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 IFNL4P1-201ENST00000607083 540 ntBASIC16.33■□□□□ 0.2
CLDN9O95484 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CLDN9O95484 AL139011.1-202ENST00000642063 584 ntBASIC16.33■□□□□ 0.2
CLDN9O95484 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.33■□□□□ 0.2
CLDN9O95484 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms