Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.61■□□□□ 0.25
VPS4BO75351 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS4BO75351 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS4BO75351 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
VPS4BO75351 MIR5100-201ENST00000579544 119 ntBASIC16.61■□□□□ 0.25
VPS4BO75351 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4BO75351 AC005336.2-201ENST00000593183 939 ntBASIC16.61■□□□□ 0.25
VPS4BO75351 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS4BO75351 AC148477.8-201ENST00000624298 468 ntBASIC16.61■□□□□ 0.25
VPS4BO75351 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS4BO75351 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS4BO75351 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VPS4BO75351 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.61■□□□□ 0.25
VPS4BO75351 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS4BO75351 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 CYP2T1P-202ENST00000641596 2535 ntBASIC16.6■□□□□ 0.25
VPS4BO75351 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4BO75351 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4BO75351 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4BO75351 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS4BO75351 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.6■□□□□ 0.25
VPS4BO75351 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4BO75351 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS4BO75351 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4BO75351 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VPS4BO75351 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS4BO75351 AC009533.2-201ENST00000543664 586 ntBASIC16.6■□□□□ 0.25
VPS4BO75351 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS4BO75351 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.6■□□□□ 0.25
VPS4BO75351 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4BO75351 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VPS4BO75351 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.6■□□□□ 0.25
VPS4BO75351 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4BO75351 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.6■□□□□ 0.25
VPS4BO75351 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
VPS4BO75351 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VPS4BO75351 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VPS4BO75351 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VPS4BO75351 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
VPS4BO75351 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS4BO75351 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
VPS4BO75351 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 HMGN1P19-201ENST00000436976 333 ntBASIC16.59■□□□□ 0.25
VPS4BO75351 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.59■□□□□ 0.25
VPS4BO75351 MEG3-211ENST00000452514 461 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS4BO75351 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VPS4BO75351 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.59■□□□□ 0.25
VPS4BO75351 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.59■□□□□ 0.25
VPS4BO75351 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.59■□□□□ 0.25
VPS4BO75351 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 AP005901.3-202ENST00000581653 237 ntBASIC16.59■□□□□ 0.25
VPS4BO75351 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 AC079781.4-201ENST00000641908 219 ntBASIC16.59■□□□□ 0.25
VPS4BO75351 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.59■□□□□ 0.25
VPS4BO75351 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VPS4BO75351 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VPS4BO75351 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VPS4BO75351 AC006449.5-201ENST00000610658 2098 ntBASIC16.58■□□□□ 0.25
VPS4BO75351 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.25
VPS4BO75351 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms