Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.99■□□□□ 0.63
CHMP2AO43633 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.99■□□□□ 0.63
CHMP2AO43633 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CHMP2AO43633 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
CHMP2AO43633 AL353732.1-201ENST00000569618 1459 ntBASIC18.98■□□□□ 0.63
CHMP2AO43633 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.98■□□□□ 0.63
CHMP2AO43633 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 AC068137.2-201ENST00000605408 478 ntBASIC18.98■□□□□ 0.63
CHMP2AO43633 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC18.98■□□□□ 0.63
CHMP2AO43633 AL121761.2-201ENST00000598007 1648 ntBASIC18.98■□□□□ 0.63
CHMP2AO43633 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.98■□□□□ 0.63
CHMP2AO43633 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
CHMP2AO43633 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CHMP2AO43633 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CHMP2AO43633 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 AC012569.1-201ENST00000591191 1524 ntBASIC18.97■□□□□ 0.63
CHMP2AO43633 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.97■□□□□ 0.63
CHMP2AO43633 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.97■□□□□ 0.63
CHMP2AO43633 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC18.97■□□□□ 0.63
CHMP2AO43633 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.97■□□□□ 0.63
CHMP2AO43633 RPL28-209ENST00000560055 670 ntTSL 3 BASIC18.97■□□□□ 0.63
CHMP2AO43633 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.97■□□□□ 0.63
CHMP2AO43633 MPDU1-223ENST00000582151 728 ntBASIC18.97■□□□□ 0.63
CHMP2AO43633 MIR4515-201ENST00000584082 81 ntBASIC18.97■□□□□ 0.63
CHMP2AO43633 AC139530.3-201ENST00000620344 690 ntBASIC18.97■□□□□ 0.63
CHMP2AO43633 AC055717.3-201ENST00000622967 595 ntBASIC18.97■□□□□ 0.63
CHMP2AO43633 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CHMP2AO43633 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.97■□□□□ 0.63
CHMP2AO43633 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CHMP2AO43633 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 AC005915.1-201ENST00000624912 2018 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CHMP2AO43633 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP2AO43633 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP2AO43633 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP2AO43633 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC18.96■□□□□ 0.63
CHMP2AO43633 FAM58CP-201ENST00000435741 640 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC18.96■□□□□ 0.63
CHMP2AO43633 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP2AO43633 AC006538.3-201ENST00000612495 578 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 AC091812.2-201ENST00000619081 385 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC18.96■□□□□ 0.63
CHMP2AO43633 AC131009.4-201ENST00000624048 1740 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 TUBB8P12-201ENST00000308911 1335 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 TUBB7P-202ENST00000428444 1305 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 TUBB8P7-204ENST00000567960 1332 ntBASIC18.96■□□□□ 0.63
CHMP2AO43633 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.96■□□□□ 0.63
CHMP2AO43633 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
CHMP2AO43633 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
CHMP2AO43633 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CHMP2AO43633 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms