Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC16.49■□□□□ 0.23
HDAC3O15379 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.49■□□□□ 0.23
HDAC3O15379 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HDAC3O15379 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
HDAC3O15379 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HDAC3O15379 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.48■□□□□ 0.23
HDAC3O15379 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.48■□□□□ 0.23
HDAC3O15379 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HDAC3O15379 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HDAC3O15379 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 AP002414.1-201ENST00000391405 1147 ntBASIC16.48■□□□□ 0.23
HDAC3O15379 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.48■□□□□ 0.23
HDAC3O15379 SIGLEC30P-201ENST00000455569 941 ntBASIC16.48■□□□□ 0.23
HDAC3O15379 VENTXP7-201ENST00000475503 772 ntBASIC16.48■□□□□ 0.23
HDAC3O15379 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC16.48■□□□□ 0.23
HDAC3O15379 KRT8P26-201ENST00000534154 1276 ntBASIC16.48■□□□□ 0.23
HDAC3O15379 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.48■□□□□ 0.23
HDAC3O15379 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HDAC3O15379 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDAC3O15379 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC3O15379 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC3O15379 PMPCAP1-201ENST00000508114 1576 ntBASIC16.47■□□□□ 0.23
HDAC3O15379 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.47■□□□□ 0.23
HDAC3O15379 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC3O15379 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC3O15379 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HDAC3O15379 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.47■□□□□ 0.23
HDAC3O15379 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 KRT8P49-201ENST00000604166 1432 ntBASIC16.47■□□□□ 0.23
HDAC3O15379 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC3O15379 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC3O15379 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 KRT18P57-201ENST00000443599 1254 ntBASIC16.47■□□□□ 0.23
HDAC3O15379 AL671277.2-201ENST00000458060 996 ntBASIC16.47■□□□□ 0.23
HDAC3O15379 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC3O15379 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC3O15379 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC3O15379 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 LINC00554-201ENST00000564841 3011 ntBASIC16.47■□□□□ 0.23
HDAC3O15379 AL513477.1-201ENST00000602865 2407 ntBASIC16.47■□□□□ 0.23
HDAC3O15379 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC3O15379 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HDAC3O15379 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.46■□□□□ 0.23
HDAC3O15379 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC3O15379 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.46■□□□□ 0.23
HDAC3O15379 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HDAC3O15379 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
HDAC3O15379 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.46■□□□□ 0.23
HDAC3O15379 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.46■□□□□ 0.23
HDAC3O15379 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC3O15379 AC063952.2-201ENST00000498792 1227 ntBASIC16.46■□□□□ 0.23
HDAC3O15379 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
HDAC3O15379 AC093827.2-201ENST00000512654 315 ntBASIC16.46■□□□□ 0.23
HDAC3O15379 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC3O15379 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC3O15379 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.46■□□□□ 0.23
HDAC3O15379 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC3O15379 AC013467.2-201ENST00000605472 835 ntBASIC16.46■□□□□ 0.23
HDAC3O15379 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.46■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms