Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC28.42■■■□□ 2.14
CUX2O14529 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC28.42■■■□□ 2.14
CUX2O14529 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC28.42■■■□□ 2.14
CUX2O14529 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC28.42■■■□□ 2.14
CUX2O14529 AC091271.1-201ENST00000611877 1162 ntBASIC28.42■■■□□ 2.14
CUX2O14529 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC28.42■■■□□ 2.14
CUX2O14529 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC28.42■■■□□ 2.14
CUX2O14529 MADD-208ENST00000405573 1823 ntTSL 5 BASIC28.42■■■□□ 2.14
CUX2O14529 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
CUX2O14529 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CUX2O14529 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC28.41■■■□□ 2.14
CUX2O14529 PRYP6-201ENST00000514804 343 ntBASIC28.41■■■□□ 2.14
CUX2O14529 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC28.41■■■□□ 2.14
CUX2O14529 AL022328.3-201ENST00000607943 679 ntBASIC28.41■■■□□ 2.14
CUX2O14529 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
CUX2O14529 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC28.41■■■□□ 2.14
CUX2O14529 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC28.41■■■□□ 2.14
CUX2O14529 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC28.41■■■□□ 2.14
CUX2O14529 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC28.41■■■□□ 2.14
CUX2O14529 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC28.41■■■□□ 2.14
CUX2O14529 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
CUX2O14529 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CUX2O14529 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC28.4■■■□□ 2.14
CUX2O14529 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CUX2O14529 WDR53-204ENST00000433160 887 ntTSL 5 BASIC28.4■■■□□ 2.14
CUX2O14529 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC28.4■■■□□ 2.14
CUX2O14529 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC28.4■■■□□ 2.14
CUX2O14529 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC28.4■■■□□ 2.14
CUX2O14529 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC28.4■■■□□ 2.14
CUX2O14529 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC28.4■■■□□ 2.14
CUX2O14529 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC28.4■■■□□ 2.14
CUX2O14529 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CUX2O14529 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC28.4■■■□□ 2.14
CUX2O14529 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC28.4■■■□□ 2.14
CUX2O14529 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC28.4■■■□□ 2.14
CUX2O14529 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC28.4■■■□□ 2.14
CUX2O14529 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 RBM39-205ENST00000397370 612 ntTSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CUX2O14529 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC28.4■■■□□ 2.14
CUX2O14529 CHMP4BP1-201ENST00000556017 588 ntBASIC28.4■■■□□ 2.14
CUX2O14529 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
CUX2O14529 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC28.39■■■□□ 2.14
CUX2O14529 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.14
CUX2O14529 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC28.39■■■□□ 2.14
CUX2O14529 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC28.39■■■□□ 2.14
CUX2O14529 AP000974.1-201ENST00000623909 2387 ntBASIC28.39■■■□□ 2.14
CUX2O14529 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC28.39■■■□□ 2.14
CUX2O14529 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
CUX2O14529 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
CUX2O14529 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC28.39■■■□□ 2.13
CUX2O14529 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC28.39■■■□□ 2.13
CUX2O14529 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC28.39■■■□□ 2.13
CUX2O14529 SCARNA20.5-201ENST00000516991 142 ntBASIC28.39■■■□□ 2.13
CUX2O14529 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC28.39■■■□□ 2.13
CUX2O14529 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC28.39■■■□□ 2.13
CUX2O14529 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC28.39■■■□□ 2.13
CUX2O14529 CASP16P-204ENST00000635032 809 ntBASIC28.39■■■□□ 2.13
CUX2O14529 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC28.39■■■□□ 2.13
CUX2O14529 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
CUX2O14529 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
CUX2O14529 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC28.38■■■□□ 2.13
CUX2O14529 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC28.38■■■□□ 2.13
CUX2O14529 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC28.38■■■□□ 2.13
CUX2O14529 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 CLK3P2-201ENST00000427566 1453 ntBASIC28.38■■■□□ 2.13
CUX2O14529 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC28.38■■■□□ 2.13
CUX2O14529 AC114501.1-201ENST00000445949 172 ntBASIC28.38■■■□□ 2.13
CUX2O14529 AC091804.1-201ENST00000486888 567 ntBASIC28.38■■■□□ 2.13
CUX2O14529 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC28.38■■■□□ 2.13
CUX2O14529 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC28.38■■■□□ 2.13
CUX2O14529 AC091167.2-201ENST00000579581 588 ntBASIC28.38■■■□□ 2.13
CUX2O14529 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC28.38■■■□□ 2.13
CUX2O14529 KC6-205ENST00000599934 556 ntTSL 4 BASIC28.38■■■□□ 2.13
CUX2O14529 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
CUX2O14529 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC28.38■■■□□ 2.13
CUX2O14529 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
CUX2O14529 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms